Institute of Biological and Chemical Systems - Biological Information Processing

Publications 2020


  1. Development of Open-Field Behaviour in the Medaka, Oryzias latipes.
    Lucon-Xiccato, T.; Conti, F.; Loosli, F.; Foulkes, N. S.; Bertolucci, C.
    2020. Biology, 9 (11), Article: 389. doi:10.3390/biology9110389Full textFull text of the publication as PDF document
  2. The GEF Trio controls endothelial cell size and arterial remodeling downstream of Vegf signaling in both zebrafish and cell models.
    Klems, A.; van Rijssel, J.; Ramms, A. S.; Wild, R.; Hammer, J.; Merkel, M.; Derenbach, L.; Préau, L.; Hinkel, R.; Suarez-Martinez, I.; Schulte-Merker, S.; Vidal, R.; Sauer, S.; Kivelä, R.; Alitalo, K.; Kupatt, C.; van Buul, J. D.; le Noble, F.
    2020. Nature Communications, 11 (1), Article: 5319. doi:10.1038/s41467-020-19008-0Full textFull text of the publication as PDF document
  3. The Genetic Programs Specifying Kolmer–Agduhr Interneurons.
    Yang, L.; Wang, F.; Strähle, U.
    2020. Frontiers in neuroscience, 14, Art.-Nr.: 577879. doi:10.3389/fnins.2020.577879
  4. Remembering Paolo: A tribute to Paolo Sassone-Corsi.
    Foulkes, N. S.; Eckel-Mahan, K.; Cermakian, N.
    2020. Journal of pineal research, 69 (4). doi:10.1111/jpi.12692
  5. Introducing Biomedisa as an open-source online platform for biomedical image segmentation.
    Lösel, P. D.; Van de Kamp, T.; Jayme, A.; Ershov, A.; Faragó, T.; Pichler, O.; Tan Jerome, N.; Aadepu, N.; Bremer, S.; Chilingaryan, S. A.; Heethoff, M.; Kopmann, A.; Odar, J.; Schmelzle, S.; Zuber, M.; Wittbrodt, J.; Baumbach, T.; Heuveline, V.
    2020. Nature Communications, 11 (1), Article no: 5577. doi:10.1038/s41467-020-19303-wFull textFull text of the publication as PDF document
  6. Inhalable aerosols from carbon fibres.
    Mülhopt, S.; Hauser, M.; Wexler, M.; Baumann, W.; Diebaté, S.; Fritsch-Decker, S.; Weiss, C.; Friesen, A.; Hufnagel, M.; Hartwig. Andrea; Gutmann, B.; Schlager, C.; Krebs, T.; Goßmann, A.-K.; Weis, F.; Stapf, D.
    2020. doi:10.5445/IR/1000125510
  7. Common and Distinct Features of Adult Neurogenesis and Regeneration in the Telencephalon of Zebrafish and Mammals.
    Diotel, N.; Lübke, L.; Strähle, U.; Rastegar, S.
    2020. Frontiers in neuroscience, 14, Art.-Nr.: 568930. doi:10.3389/fnins.2020.568930Full textFull text of the publication as PDF document
  8. One‐Step Fabrication of Perovskite‐Based Upconversion Devices.
    Wieghold, S.; Bieber, A. S.; Lackner, J.; Nienhaus, K.; Nienhaus, G. U.; Nienhaus, L.
    2020. ChemPhotoChem, 4 (9), 704–712. doi:10.1002/cptc.202000068
  9. EGFR/Ras-induced CCL20 production modulates the tumour microenvironment.
    Hippe, A.; Braun, S. A.; Oláh, P.; Gerber, P. A.; Schorr, A.; Seeliger, S.; Holtz, S.; Jannasch, K.; Pivarcsi, A.; Buhren, B.; Schrumpf, H.; Kislat, A.; Bünemann, E.; Steinhoff, M.; Fischer, J.; Lira, S. A.; Boukamp, P.; Hevezi, P.; Stoecklein, N. H.; Hoffmann, T.; Alves, F.; Sleeman, J.; Bauer, T.; Klufa, J.; Amberg, N.; Sibilia, M.; Zlotnik, A.; Müller-Homey, A.; Homey, B.
    2020. British journal of cancer, 123 (6), 942–954. doi:10.1038/s41416-020-0943-2
  10. Improving quality in nanoparticle-induced cytotoxicity testing by a tiered inter-laboratory comparison study.
    Nelissen, I.; Haase, A.; Anguissola, S.; Rocks, L.; Jacobs, A.; Willems, H.; Riebeling, C.; Luch, A.; Piret, J.-P.; Toussaint, O.; Trouiller, B.; Lacroix, G.; Gutleb, A. C.; Contal, S.; Diabaté, S.; Weiss, C.; Lozano-Fernández, T.; González-Fernández, Á.; Dusinska, M.; Huk, A.; Stone, V.; Kanase, N.; Nocuń, M.; Stępnik, M.; Meschini, S.; Ammendolia, M. G.; Lewinski, N.; Riediker, M.; Venturini, M.; Benetti, F.; Topinka, J.; Brzicova, T.; Milani, S.; Rädler, J.; Salvati, A.; Dawson, K. A.
    2020. Nanomaterials, 10 (8), Art.Nr. 1430. doi:10.3390/nano10081430Full textFull text of the publication as PDF document
  11. Sociocultural incentives for cancer care implementation.
    Haier, J.; Sleeman, J.; Schäfers, J.
    2020. Clinical & experimental metastasis. doi:10.1007/s10585-020-10050-2Full textFull text of the publication as PDF document
  12. Toward Nanotechnology-Enabled Approaches against the COVID-19 Pandemic.
    Weiss, C.; Carriere, M.; Fusco, L.; Capua, I.; Regla-Nava, J. A.; Pasquali, M.; Scott, J. A.; Vitale, F.; Unal, M. A.; Mattevi, C.; Bedognetti, D.; Merkoçi, A.; Tasciotti, E.; Yilmazer, A.; Gogotsi, Y.; Stellacci, F.; Delogu, L. G.
    2020. ACS nano, 14 (6), 6383–6406. doi:10.1021/acsnano.0c03697
  13. Assessment of incentivizing effects for cancer care frameworks.
    Haier, J.; Sleeman, J.; Schäfers, J.
    2020. Clinical & experimental metastasis, 37 (4), 447–450. doi:10.1007/s10585-020-10046-y
  14. Influence of wood species on toxicity of log-wood stove combustion aerosols: A parallel animal and air-liquid interface cell exposure study on spruce and pine smoke.
    Ihantola, T.; Di Bucchianico, S.; Happo, M.; Happo, M.; Ihalainen, M.; Uski, O.; Bauer, S.; Kuuspalo, K.; Kuuspalo, K.; Sippula, O.; Tissari, J.; Oeder, S.; Hartikainen, A.; Rönkkö, T. J.; Martikainen, M.-V.; Huttunen, K.; Vartiainen, P.; Suhonen, H.; Kortelainen, M.; Lamberg, H.; Leskinen, A.; Leskinen, A.; Sklorz, M.; Sklorz, M.; Michalke, B.; Dilger, M.; Weiss, C.; Dittmar, G.; Beckers, J.; Beckers, J.; Beckers, J.; Irmler, M.; Buters, J.; Candeias, J.; Czech, H.; Czech, H.; Yli-Pirilä, P.; Abbaszade, G.; Jakobi, G.; Orasche, J.; Schnelle-Kreis, J.; Kanashova, T.; Kanashova, T.; Karg, E.; Streibel, T.; Streibel, T.; Passig, J.; Hakkarainen, H.; Jokiniemi, J.; Zimmermann, R.; et al.
    2020. Particle and fibre toxicology, 17 (1), Article: 27. doi:10.1186/s12989-020-00355-1Full textFull text of the publication as PDF document
  15. Measuring ligand-cell surface receptor affinities with axial line-scanning fluorescence correlation spectroscopy.
    Eckert, A. F.; Gao, P.; Wesslowski, J.; Wang, X.; Rath, J.; Nienhaus, K.; Davidson, G.; Nienhaus, G. U.
    2020. eLife, 9, Article No. e55286. doi:10.7554/eLife.55286Full textFull text of the publication as PDF document
  16. Pcdh18a regulates endocytosis of E-cadherin during axial mesoderm development in zebrafish.
    Bosze, B.; Ono, Y.; Mattes, B.; Sinner, C.; Gourain, V.; Thumberger, T.; Tlili, S.; Wittbrodt, J.; Saunders, T. E.; Strähle, U.; Schug, A.; Scholpp, S.
    2020. Histochemistry and cell biology. doi:10.1007/s00418-020-01887-5Full textFull text of the publication as PDF document
  17. Expression of a Barhl1a reporter in subsets of retinal ganglion cells and commissural neurons of the developing zebrafish brain.
    Albadri, S.; Armant, O.; Aljand-Geschwill, T.; Del Bene, F.; Carl, M.; Strähle, U.; Poggi, L.
    2020. Scientific reports, 10 (1), Art. Nr.: 8814. doi:10.1038/s41598-020-65435-wFull textFull text of the publication as PDF document
  18. Long non-coding RNA LASSIE regulates shear stress sensing and endothelial barrier function.
    Stanicek, L.; Lozano-Vidal, N.; Bink, D. I.; Hooglugt, A.; Yao, W.; Wittig, I.; van Rijssel, J.; van Buul, J. D.; van Bergen, A.; Klems, A.; Ramms, A. S.; Le Noble, F.; Hofmann, P.; Szulcek, R.; Wang, S.; Offermanns, S.; Ercanoglu, M. S.; Kwon, H.-B.; Stainier, D.; Huveneers, S.; Kurian, L.; Dimmeler, S.; Boon, R. A.
    2020. Communications biology, 3 (1), Art.Nr. 265. doi:10.1038/s42003-020-0987-0Full textFull text of the publication as PDF document
  19. Proteasome subunit variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress.
    Kröll‐Hermi, A.; Ebstein, F.; Stoetzel, C.; Geoffroy, V.; Schaefer, E.; Scheidecker, S.; Bär, S.; Takamiya, M.; Kawakami, K.; Zieba, B. A.; Studer, F.; Pelletier, V.; Eyermann, C.; Speeg‐Schatz, C.; Laugel, V.; Lipsker, D.; Sandron, F.; McGinn, S.; Boland, A.; Deleuze, J.; Kuhn, L.; Chicher, J.; Hammann, P.; Friant, S.; Etard, C.; Krüger, E.; Muller, J.; Strähle, U.; Dollfus, H.
    2020. EMBO molecular medicine, 12 (7), Art. Nr.: e11861. doi:10.15252/emmm.201911861Full textFull text of the publication as PDF document
  20. Severe metabolic alterations in liver cancer lead to ERK pathway activation and drug resistance.
    Nwosu, Z. C.; Piorońska, W.; Battello, N.; Zimmer, A. D.; Dewidar, B.; Han, M.; Pereira, S.; Blagojevic, B.; Castven, D.; Charlestin, V.; Holenya, P.; Lochead, J.; De La Torre, C.; Gretz, N.; Sajjakulnukit, P.; Zhang, L.; Ward, M. H.; Marquardt, J. U.; di Magliano, M. P.; Lyssiotis, C. A.; Sleeman, J.; Wölfl, S.; Ebert, M. P.; Meyer, C.; Hofmann, U.; Dooley, S.
    2020. EBioMedicine, 54, Art.Nr.: 102699. doi:10.1016/j.ebiom.2020.102699Full textFull text of the publication as PDF document
  21. Bone morphogenetic protein signaling regulates Id1-mediated neural stem cell quiescence in the adult zebrafish brain via a phylogenetically conserved enhancer module.
    Zhang, G.; Ferg, M.; Lübke, L.; Takamiya, M.; Beil, T.; Gourain, V.; Diotel, N.; Strähle, U.; Rastegar, S.
    2020. Stem cells, 38, 875–889. doi:10.1002/stem.3182Full textFull text of the publication as PDF document
  22. Toxicology and Risk Assessment: A Comprehensive Introduction, 2nd Edition. Edited by Helmut Greim and Robert Snyder.
    Dietrich, C.; Weiss, C.
    2020. ChemMedChem, 15 (1), 172. doi:10.1002/cmdc.201900586
  23. Nano Meets Micro-Translational Nanotechnology in Medicine: Nano-Based Applications for Early Tumor Detection and Therapy.
    Siemer, S.; Wünsch, D.; Khamis, A.; Lu, Q.; Scherberich, A.; Filippi, M.; Krafft, M. P.; Hagemann, J.; Weiss, C.; Ding, G.-B.; Stauber, R. H.; Gribko, A.
    2020. Nanomaterials, 10 (2), 383. doi:10.3390/nano10020383Full textFull text of the publication as PDF document
  24. Toxicity assessment of pristine and thermally treated carbon fibres.
    Diabaté, S.; Fritsch-Decker, S.; Mülhopt, S.; Wexler, M.; Hauser, M.; Baumann, W.; Hufnagel, M.; Friesen, A.; Hartwig, A.; Stapf, D.; Weiss, C.
    2020. Naunyn-Schmiedeberg’s archives of pharmacology, 393 (S1), S89. doi:10.1007/s00210-020-01828-y
  25. Correction to: Gene duplication and functional divergence of the zebrafish otospiralin genes.
    Baanannou, A.; Rastegar, S.; Bouzid, A.; Takamiya, M.; Gerber, V.; Souissi, A.; Beil, T.; Jrad, O.; Strähle, U.; Masmoudi, S.
    2020. Development genes and evolution, 230 (1), 37. doi:10.1007/s00427-020-00647-8
  26. Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions.
    Gierten, J.; Pylatiuk, C.; Hammouda, O. T.; Schock, C.; Stegmaier, J.; Wittbrodt, J.; Gehrig, J.; Loosli, F.
    2020. Scientific reports, 10 (1), Article no: 2046. doi:10.1038/s41598-020-58563-wFull textFull text of the publication as PDF document
  27. Guidance of healthcare development for metastatic cancer patients as an example for setting incentives.
    Haier, J.; Sleeman, J.; Schäfers, J.
    2020. Clinical & experimental metastasis, 37 (1), 1–5. doi:10.1007/s10585-019-10014-1
  28. Differential Nanoparticle Sequestration by Macrophages and Scavenger Endothelial Cells Visualized in Real-Time and at Ultrastructural Resolution.
    Hayashi, Y.; Takamiya, M.; Jensen, P. B.; Ojea-Jiménez, I.; Claude, H.; Antony, C.; Kjaer-Sorensen, K.; Grabher, C.; Boesen, T.; Gilliland, D.; Oxvig, C.; Straehle, U.; Weiss, C.
    2020. ACS nano, 14 (2), 1665–1681. doi:10.1021/acsnano.9b07233
  29. Toxicity of mercury: Molecular evidence.
    Yang, L.; Zhang, Y.; Wang, F.; Luo, Z.; Guo, S.; Strähle, U.
    2020. Chemosphere, 245, 125586. doi:10.1016/j.chemosphere.2019.125586
  30. Light-controllable dithienylethene-modified cyclic peptides: photoswitching the in vivo toxicity in zebrafish embryos.
    Afonin, S.; Babii, O.; Reuter, A.; Middel, V.; Takamiya, M.; Strähle, U.; Komarov, I. V.; Ulrich, A. S.
    2020. Beilstein journal of organic chemistry, 16, 39–49. doi:10.3762/bjoc.16.6Full textFull text of the publication as PDF document
  31. Self-assembled thermosensitive luminescent nanoparticles with peptide-Au conjugates for cellular imaging and drug delivery.
    Zhang, X.; Liu, W.; Wang, H.; Zhao, X.; Zhang, Z.; Nienhaus, G. U.; Shang, L.; Su, Z.
    2020. Chinese chemical letters, 31 (3), 859–864. doi:10.1016/j.cclet.2019.06.032