Publications 2022


  1. Comparison of anxiety-like and social behaviour in medaka and zebrafish
    Lucon-Xiccato, T.; Loosli, F.; Conti, F.; Foulkes, N. S.; Bertolucci, C.
    2022. Scientific Reports, 12 (1), Art.Nr. 10926. doi:10.1038/s41598-022-14978-1 Full textFull text of the publication as PDF document 
  2. Loss of the Bardet-Biedl protein Bbs1 alters photoreceptor outer segment protein and lipid composition
    Masek, M.; Etard, C.; Hofmann, C.; Hülsmeier, A. J.; Zang, J.; Takamiya, M.; Gesemann, M.; Neuhauss, S. C. F.; Hornemann, T.; Strähle, U.; Bachmann-Gagescu, R.
    2022. Nature Communications, 13 (1), 1282. doi:10.1038/s41467-022-28982-6 Full textFull text of the publication as PDF document 
  3. Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel
    Leger, A.; Brettell, I.; Monahan, J.; Barton, C.; Wolf, N.; Kusminski, N.; Herder, C.; Aadepu, N.; Becker, C.; Gierten, J.; Hammouda, O. T.; Hasel, E.; Lischik, C.; Lust, K.; Sokolova, N.; Suzuki, R.; Tavhelidse, T.; Thumberger, T.; Tsingos, E.; Watson, P.; Welz, B.; Naruse, K.; Loosli, F.; Wittbrodt, J.; Birney, E.; Fitzgerald, T.
    2022. Genome biology, 23 (1), Article no: 58. doi:10.1186/s13059-022-02602-4 Full textFull text of the publication as PDF document 
  4. The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel
    Fitzgerald, T.; Brettell, I.; Leger, A.; Wolf, N.; Kusminski, N.; Monahan, J.; Barton, C.; Herder, C.; Aadepu, N.; Gierten, J.; Becker, C.; Hammouda, O. T.; Hasel, E.; Lischik, C.; Lust, K.; Sokolova, N.; Suzuki, R.; Tsingos, E.; Tavhelidse, T.; Thumberger, T.; Watson, P.; Welz, B.; Khouja, N.; Naruse, K.; Birney, E.; Wittbrodt, J.; Loosli, F.
    2022. Genome biology, 23 (1), Article no: 59. doi:10.1186/s13059-022-02623-z Full textFull text of the publication as PDF document 
  5. Highly Fluorinated Peptide Probes with Enhanced In Vivo Stability for F‐MRI
    Meng, B.; Grage, S. L.; Babii, O.; Takamiya, M.; MacKinnon, N.; Schober, T.; Hutskalov, I.; Nassar, O.; Afonin, S.; Koniev, S.; Komarov, I. V.; Korvink, J. G.; Strähle, U.; Ulrich, A. S.
    2022. Small, 18 (41), Art.Nr. 2107308. doi:10.1002/smll.202107308 Full textFull text of the publication as PDF document 
  6. Genetically encodable fluorescent protein markers in advanced optical imaging
    Nienhaus, K.; Nienhaus, G. U.
    2022. Methods and Applications in Fluorescence, 10 (4), Art.-Nr.: 042002. doi:10.1088/2050-6120/ac7d3f Full textFull text of the publication as PDF document 
  7. Medaka as a model for seasonal plasticity: Photoperiod-mediated changes in behaviour, cognition, and hormones
    Lucon-Xiccato, T.; Montalbano, G.; Frigato, E.; Loosli, F.; Foulkes, N. S.; Bertolucci, C.
    2022. Hormones and Behavior, 145, Article no: 105244. doi:10.1016/j.yhbeh.2022.105244 
  8. Deep-learning microscopy image reconstruction with quality control reveals second-scale rearrangements in RNA polymerase II clusters
    Hajiabadi, H.; Mamontova, I.; Prizak, R.; Pancholi, A.; Koziolek, A.; Hilbert, L.
    2022. (K. E. Nelson, Ed.) PNAS Nexus, 1 (3), 1–12. doi:10.1093/pnasnexus/pgac065 Full textFull text of the publication as PDF document 
  9. Gene Expression Profiling of Mono- and Co-Culture Models of the Respiratory Tract Exposed to Crystalline Quartz under Submerged and Air-Liquid Interface Conditions
    Friesen, A.; Fritsch-Decker, S.; Hufnagel, M.; Mülhopt, S.; Stapf, D.; Weiss, C.; Hartwig, A.
    2022. International Journal of Molecular Sciences, 23 (14), 7773. doi:10.3390/ijms23147773 Full textFull text of the publication as PDF document 
  10. Homodimerization Counteracts the Detrimental Effect of Nitrogenous Heme Ligands on the Enzymatic Activity of Acanthamoeba castellanii CYP51
    Nienhaus, K.; Sharma, V.; Nienhaus, G. U.; Podust, L. M.
    2022. Biochemistry, 61 (13), 1363–1377. doi:10.1021/acs.biochem.2c00198 
  11. Characterisation of inhalable aerosols from carbon fibres
    Mülhopt, S.; Hauser, M.; Wexler, M.; Mahl, J.; Baumann, W.; Fritsch-Decker, S.; Weiss, C.; Friesen, A.; Hufnagel, M.; Hartwig, A.; Gutmann, B.; Schlager, C.; Krebs, T.; Goßmann, A.-K.; Weis, F.; Stapf, D.
    2022. 8th EFCA International Symposium on Ultrafine Particles - Air Quality and Climate. Abstract I.5, 52, European Federation of Clean Air and Environmental Protection Associations (EFCA) 
  12. Protein adsorption onto nanomaterials engineered for theranostic applications
    Nienhaus, K.; Xue, Y.; Shang, L.; Nienhaus, G. U.
    2022. Nanotechnology, 33 (26), Art.-Nr.: 262001. doi:10.1088/1361-6528/ac5e6c 
  13. Comparing α-Quartz-Induced Cytotoxicity and Interleukin-8 Release in Pulmonary Mono- and Co-Cultures Exposed under Submerged and Air-Liquid Interface Conditions
    Friesen, A.; Fritsch-Decker, S.; Hufnagel, M.; Mülhopt, S.; Stapf, D.; Hartwig, A.; Weiss, C.
    2022. International Journal of Molecular Sciences, 23 (12), 6412. doi:10.3390/ijms23126412 Full textFull text of the publication as PDF document 
  14. A chemical probe for BAG1 targets androgen receptor-positive prostate cancer through oxidative stress signaling pathway
    Kuznik, N. C.; Solozobova, V.; Lee, I. I.; Jung, N.; Yang, L.; Nienhaus, K.; Ntim, E. A.; Rottenberg, J. T.; Muhle-Goll, C.; Kumar, A. R.; Peravali, R.; Gräßle, S.; Gourain, V.; Deville, C.; Cato, L.; Neeb, A.; Dilger, M.; Cramer von Clausbruch, C. A.; Weiss, C.; Kieffer, B.; Nienhaus, G. U.; Brown, M.; Bräse, S.; Cato, A. C. B.
    2022. iScience, 25 (5), Art.Nr. 104175. doi:10.1016/j.isci.2022.104175 Full textFull text of the publication as PDF document 
  15. RNA polymerase II clusters form in line with surface condensation on regulatory chromatin
    Hilbert, L.
    2022 
  16. Sulfated hyaluronic acid inhibits the hyaluronidase CEMIP and regulates the HA metabolism, proliferation and differentiation of fibroblasts
    Schmaus, A.; Rothley, M.; Schreiber, C.; Möller, S.; Roßwag, S.; Franz, S.; Garvalov, B. K.; Thiele, W.; Spataro, S.; Herskind, C.; Prunotto, M.; Anderegg, U.; Schnabelrauch, M.; Sleeman, J.
    2022. Matrix Biology, 109, 173–191. doi:10.1016/j.matbio.2022.04.001 
  17. Single molecule localization-based analysis of clathrin-coated pit and caveolar dynamics
    Ma, R.; Štefl, M.; Nienhaus, G. U.
    2022. Nanoscale Horizons, 7 (4), 385–395. doi:10.1039/D2NH00008C 
  18. Anti-Inflammatory Characteristics of Local Anesthetics: Inhibition of TNF-α Secretion of Lipopolysaccharide-Stimulated Leucocytes in Human Blood Samples
    Weinschenk, S.; Weiss, C.; Benrath, J.; Baehr, V. von; Strowitzki, T.; Feißt, M.
    2022. International Journal of Molecular Sciences, 23 (6), Article no: 3283. doi:10.3390/ijms23063283 Full textFull text of the publication as PDF document 
  19. Surface functionalisation-dependent adverse effects of metal nanoparticles and nanoplastics in zebrafish embryos
    Hansjosten, I.; Takamiya, M.; Rapp, J.; Reiner, L.; Fritsch-Decker, S.; Mattern, D.; Andraschko, S.; Anders, C.; Pace, G.; Dickmeis, T.; Peravali, R.; Rastegar, S.; Strähle, U.; Hsiao, I.-L.; Gilliland, D.; Ojea-Jimenez, I.; Ambrose, S. V. Y.; Belinga-Desaunay-Nault, M.-F. A.; Khan, A. O.; Lynch, I.; Valsami-Jones, E.; Diabaté, S.; Weiss, C.
    2022. Environmental science / Nano, 91 (1), 375–392. doi:10.1039/d1en00299f 
  20. CEMIP, a Promising Biomarker That Promotes the Progression and Metastasis of Colorectal and Other Types of Cancer
    Domanegg, K.; Sleeman, J. P.; Schmaus, A.
    2022. Cancers, 14 (20), Art.Nr. 5093. doi:10.3390/cancers14205093 Full textFull text of the publication as PDF document 
  21. Conserved and diverged asymmetric gene expression in the brain of teleosts
    Agostini, C.; Bühler, A.; Antico Calderone, A.; Aadepu, N.; Herder, C.; Loosli, F.; Carl, M.
    2022. Frontiers in Cell and Developmental Biology, 10, Art.-Nr.: 1005776. doi:10.3389/fcell.2022.1005776 Full textFull text of the publication as PDF document 
  22. Phenotypic Discovery of Triazolo[1,5- c ]quinazolines as a First-In-Class Bone Morphogenetic Protein Amplifier Chemotype
    Wesseler, F.; Lohmann, S.; Riege, D.; Halver, J.; Roth, A.; Pichlo, C.; Weber, S.; Takamiya, M.; Müller, E.; Ketzel, J.; Flegel, J.; Gihring, A.; Rastegar, S.; Bertrand, J.; Baumann, U.; Knippschild, U.; Peifer, C.; Sievers, S.; Waldmann, H.; Schade, D.
    2022. Journal of Medicinal Chemistry. doi:10.1021/acs.jmedchem.2c01199 
  23. Different Involvement of Vimentin during Invasion by Listeria monocytogenes at the Blood–Brain and the Blood–Cerebrospinal Fluid Barriers In Vitro
    Banovic, F.; Schulze, S.; Abu Mraheil, M.; Hain, T.; Chakraborty, T.; Orian-Rousseau, V.; Moroniak, S.; Weiss, C.; Ishikawa, H.; Schroten, H.; Adam, R.; Schwerk, C.
    2022. International Journal of Molecular Sciences, 23 (21), 12908. doi:10.3390/ijms232112908 Full textFull text of the publication as PDF document 
  24. Distribution of microglia/immune cells in the brain of adult zebrafish in homeostatic and regenerative conditions: Focus on oxidative stress during brain repair
    Narra, S. S.; Rondeau, P.; Fernezelian, D.; Gence, L.; Ghaddar, B.; Bourdon, E.; Lefebvre d’Hellencourt, C.; Rastegar, S.; Diotel, N.
    2022. Journal of Comparative Neurology. doi:10.1002/cne.25421 
  25. Highly Luminescent Positively Charged Quantum Dots Interacting with Proteins and Cells
    Wang, H.; Nienhaus, K.; Shang, L.; Nienhaus, G. U.
    2022. Chinese Journal of Chemistry, 40 (22), 2685–2693. doi:10.1002/cjoc.202200350 Full textFull text of the publication as PDF document 
  26. CEMIP ( HYBID , KIAA1199 ): structure, function and expression in health and disease
    Spataro, S.; Guerra, C.; Cavalli, A.; Sgrignani, J.; Sleeman, J.; Poulain, L.; Boland, A.; Scapozza, L.; Moll, S.; Prunotto, M.
    2022. The FEBS Journal. doi:10.1111/febs.16600 Full textFull text of the publication as PDF document 
  27. A DNA Segregation Module for Synthetic Cells
    Tran, M. P.; Chatterjee, R.; Dreher, Y.; Fichtler, J.; Jahnke, K.; Hilbert, L.; Zaburdaev, V.; Göpfrich, K.
    2022. Small, Art.-Nr.: 2202711. doi:10.1002/smll.202202711 Full textFull text of the publication as PDF document 
  28. Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
    Baranasic, D.; Hörtenhuber, M.; Balwierz, P. J.; Zehnder, T.; Mukarram, A. K.; Nepal, C.; Várnai, C.; Hadzhiev, Y.; Jimenez-Gonzalez, A.; Li, N.; Wragg, J.; D’Orazio, F. M.; Relic, D.; Pachkov, M.; Díaz, N.; Hernández-Rodríguez, B.; Chen, Z.; Stoiber, M.; Dong, M.; Stevens, I.; Ross, S. E.; Eagle, A.; Martin, R.; Obasaju, O.; Rastegar, S.; McGarvey, A. C.; Kopp, W.; Chambers, E.; Wang, D.; Kim, H. R.; Acemel, R. D.; Naranjo, S.; Łapiński, M.; Chong, V.; Mathavan, S.; Peers, B.; Sauka-Spengler, T.; Vingron, M.; Carninci, P.; Ohler, U.; Lacadie, S. A.; Burgess, S. M.; Winata, C.; van Eeden, F.; Vaquerizas, J. M.; Gómez-Skarmeta, J. L.; Onichtchouk, D.; Brown, B. J.; Bogdanovic, O.; van Nimwegen, E.; et al.
    2022. Nature Genetics, 54, 1037–1050. doi:10.1038/s41588-022-01089-w Full textFull text of the publication as PDF document 
  29. Interdependence of Angiogenesis and Arteriogenesis in Development and Disease
    le Noble, F.; Kupatt, C.
    2022. International Journal of Molecular Sciences, 23 (7), Art.-Nr.: 3879. doi:10.3390/ijms23073879 Full textFull text of the publication as PDF document 
  30. A Zebrafish Model for a Rare Genetic Disease Reveals a Conserved Role for FBXL3 in the Circadian Clock System
    Confino, S.; Dor, T.; Tovin, A.; Wexler, Y.; Ben-Moshe Livne, Z.; Kolker, M.; Pisanty, O.; Park, S. K.; Geyer, N.; Reiter, J.; Edvardson, S.; Mor-Shaked, H.; Elpeleg, O.; Vallone, D.; Appelbaum, L.; Foulkes, N. S.; Gothilf, Y.
    2022. International Journal of Molecular Sciences, 23 (4), Artkl.Nr.: 2373. doi:10.3390/ijms23042373 Full textFull text of the publication as PDF document 
  31. Loss of ASAP1 in the MMTV-PyMT model of luminal breast cancer activates AKT, accelerates tumorigenesis, and promotes metastasis
    Schreiber, C.; Gruber, A.; Roßwag, S.; Saraswati, S.; Harkins, S.; Thiele, W.; Foroushani, Z. H.; Munding, N.; Schmaus, A.; Rothley, M.; Dimmler, A.; Tanaka, M.; Garvalov, B. K.; Sleeman, J. P.
    2022. Cancer Letters, 533, Art.-Nr.: 215600. doi:10.1016/j.canlet.2022.215600 
  32. Mandipropamid as a chemical inducer of proximity for in vivo applications
    Ziegler, M. J.; Yserentant, K.; Dunsing, V.; Middel, V.; Gralak, A. J.; Pakari, K.; Bargstedt, J.; Kern, C.; Petrich, A.; Chiantia, S.; Strähle, U.; Herten, D.-P.; Wombacher, R.
    2022. Nature chemical biology, 18 (1), 64–69. doi:10.1038/s41589-021-00922-3 Full textFull text of the publication as PDF document 
  33. mdka Expression Is Associated with Quiescent Neural Stem Cells during Constitutive and Reactive Neurogenesis in the Adult Zebrafish Telencephalon
    Lübke, L.; Zhang, G.; Strähle, U.; Rastegar, S.
    2022. Brain Sciences, 12 (284). doi:10.3390/brainsci12020284 Full textFull text of the publication as PDF document 
  34. Allele-specific endogenous tagging and quantitative analysis of β-catenin in colorectal cancer cells
    Ambrosi, G.; Voloshanenko, O.; Eckert, A. F.; Kranz, D.; Nienhaus, G. U.; Boutros, M.
    2022. eLife, 11. doi:10.7554/eLife.64498 Full textFull text of the publication as PDF document 
  35. Two plus one is almost three: a fast approximation for multi-view deconvolution
    Hüpfel, M.; Fernández Merino, M.; Bennemann, J.; Takamiya, M.; Rastegar, S.; Tursch, A.; Holstein, T. W.; Nienhaus, G. U.
    2022. Biomedical optics express, 13 (1), 147–158. doi:10.1364/BOE.443660 Full textFull text of the publication as PDF document 
  36. Early-life lead exposure induces long-term toxicity in the central nervous system: From zebrafish larvae to juveniles and adults
    Wang, Z.; Zhao, H.; Xu, Y.; Zhao, J.; Song, Z.; Bi, Y.; Li, Y.; Lan, X.; Pan, C.; Foulkes, N. S.; Zhang, S.
    2022. The science of the total environment, 804, Art.Nr. 150185. doi:10.1016/j.scitotenv.2021.150185