Publications 2024


  1. Gene expression patterns of the LDL receptor and its inhibitor Pcsk9 in the adult zebrafish brain suggest a possible role in neurogenesis
    Gence, L.; Morello, E.; Rastegar, S.; Apalama, M. L.; Meilhac, O.; Bascands, J.-L.; Diotel, N.
    2024. European Journal of Neuroscience. doi:10.1111/ejn.16586 Full textFull text of the publication as PDF document 
  2. The Role of the Neural Cell Adhesion Molecule Ncam1b during Development and Regeneration of the Zebrafish Lateral Line System = Die Rolle des Neuronalen Zelladhäsionsmoleküls Ncam1b während der Entwicklung und Regeneration des Seitenliniensystems im Zebrafisch. PhD dissertation
    Lange, A.
    2024, October 21. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000174009 
  3. Emc1 is essential for vision and zebrafish photoreceptor outer segment morphogenesis
    McCann, T.; Sundaramurthi, H.; Walsh, C.; Virdi, S.; Alvarez, Y.; Sapetto-Rebow, B.; Collery, R. F.; Carter, S. P.; Moran, A.; Mulholland, R.; O’Connor, J. J.; Taylor, M. R.; Rauch, N.; Starostik, M. R.; English, M. A.; Swaroop, A.; Geisler, R.; Reynolds, A. L.; Kennedy, B. N.
    2024. The FASEB Journal, 38 (19), Art.-Nr.: e70086. doi:10.1096/fj.202401977R Full textFull text of the publication as PDF document 
  4. Comparative insight into the regenerative mechanisms of the adult brain in zebrafish and mouse: highlighting the importance of the immune system and inflammation in successful regeneration
    Chen, J.; Sanchez-Iranzo, H.; Diotel, N.; Rastegar, S.
    2024. The FEBS Journal, 291 (19), 4193–4205. doi:10.1111/febs.17231 Full textFull text of the publication as PDF document 
  5. The dynamic function of nTRIP6 in the regulation of myogenesis. PhD dissertation
    Gonda, Z.
    2024, September 9. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000173046 Full textFull text of the publication as PDF document 
  6. Investigation of the molecular mechanisms of the neuronal differentiation in p2 domain in the spinal cord. PhD dissertation
    Cucun, G.
    2024, August 28. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000173043 
  7. Exploring zebrafish spinal cord development and tissue regeneration through transcriptomic data analysis. PhD dissertation
    Chen, F.
    2024, August 27. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000173042 
  8. Nanoliter Droplet Microarrays Combined with Impedance Spectroscopy and Sandwiching Method for Advancements in Miniaturized Cell Culture and Screening. PhD dissertation
    Zhou, M.
    2024, August 19. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000172875 Full textFull text of the publication as PDF document 
  9. The role of host response to chemotherapy: resistance, metastasis and clinical implications
    Deo, A.; Sleeman, J. P.; Shaked, Y.
    2024. Clinical and Experimental Metastasis, 41 (4), 495–507. doi:10.1007/s10585-023-10243-5 
  10. Insights into the mechanisms of neuron generation and specification in the zebrafish ventral spinal cord
    Cucun, G.; Köhler, M.; Pfitsch, S.; Rastegar, S.
    2024. The FEBS Journal, 291 (4), 646–662. doi:10.1111/febs.16913 Full textFull text of the publication as PDF document 
  11. Synthesis and Structure of Novel Phenothiazine Derivatives, and Compound Prioritization via In Silico Target Search and Screening for Cytotoxic and Cholinesterase Modulatory Activities in Liver Cancer Cells and In Vivo in Zebrafish
    Kisla, M. M.; Yaman, M.; Zengin-Karadayi, F.; Korkmaz, B.; Bayazeid, O.; Kumar, A.; Peravali, R.; Gunes, D.; Tiryaki, R. S.; Gelinci, E.; Cakan-Akdogan, G.; Ates-Alagoz, Z.; Konu, O.
    2024. ACS Omega, 9 (28), Art.-Nr.:30594–30614. doi:10.1021/acsomega.3c06532 Full textFull text of the publication as PDF document 
  12. Sporadic feeding regulates robust food entrainable circadian clocks in blind cavefish
    Di Rosa, V.; Frigato, E.; Negrini, P.; Cristiano, W.; López-Olmeda, J. F.; Rétaux, S.; Sánchez-Vázquez, F. J.; Foulkes, N. S.; Bertolucci, C.
    2024. iScience, 27 (7), 110171. doi:10.1016/j.isci.2024.110171 Full textFull text of the publication as PDF document 
  13. Beam shaping in light-sheet microscopy: an experimental analysis
    Hüpfel, M.; Nienhaus, G. U.
    2024. Journal of Physics: Photonics, 6 (3), Art.-Nr.: 035003. doi:10.1088/2515-7647/ad46a9 Full textFull text of the publication as PDF document 
  14. TRIM25 controls the Androgen Receptor and PSA/KLK3 levels in Prostate Cancer. PhD dissertation
    Pauletto, E.
    2024, June 28. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000172055 Full textFull text of the publication as PDF document 
  15. Thio-2 Inhibits Key Signaling Pathways Required for the Development and Progression of Castration-resistant Prostate Cancer
    Neeb, A.; Figueiredo, I.; Bogdan, D.; Cato, L.; Stober, J.; Jiménez-Vacas, J. M.; Gourain, V.; Lee, I. I.; Seeger, R.; Muhle-Goll, C.; Gurel, B.; Welti, J.; Nava Rodrigues, D.; Rekowski, J.; Qiu, X.; Jiang, Y.; Di Micco, P.; Mateos, B.; Bielskutė, S.; Riisnaes, R.; Ferreira, A.; Miranda, S.; Crespo, M.; Buroni, L.; Ning, J.; Carreira, S.; Bräse, S.; Jung, N.; Gräßle, S.; Swain, A.; Salvatella, X.; Plymate, S. R.; Al-Lazikani, B.; Long, H. W.; Yuan, W.; Brown, M.; Cato, A. C. B.; de Bono, J. S.; Sharp, A.
    2024. Molecular Cancer Therapeutics, 23 (6), 791–808. doi:10.1158/1535-7163.MCT-23-0354 Full textFull text of the publication as PDF document 
  16. Forty years on: a brief history of clinical and experimental metastasis
    Sleeman, J. P.; Haier, J.
    2024. Clinical & Experimental Metastasis, 41 (3), 159–161. doi:10.1007/s10585-024-10281-7 Full textFull text of the publication as PDF document 
  17. Mechanistic insights into the adverse effects of cisplatin employing the zebrafish model. PhD dissertation
    Zhang, D.
    2024, May 7. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000169668 
  18. Reversible Influence of Hemipiperazine Photochromism on the Early Development of Zebrafish Embryo
    Seliwjorstow, A.; Takamiya, M.; Rastegar, S.; Pianowski, Z.
    2024. ChemBioChem, 25 (8), Article e202400143. doi:10.1002/cbic.202400143 Full textFull text of the publication as PDF document 
  19. The regulation of RHEB subcellular localisation in early zebrafish myofibres. PhD dissertation
    Fettig, R.
    2024, April 3. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000168930 
  20. Systematic acquisition of toxicity data in non-sentient models across animal phylogeny: implications for read-across and estimation of toxicity in humans
    Hayot, G.; Massei, R.; Lloyd, G.; Keith, N.; Diwan, G.; Martínez López, R.; Barnard, M.; Cramer von Clausbruch, C. A.; Grasse, N.; Smoot, S.; Escher, B.; Tennessen, J.; Tindall, A.; Oliver, B.; Shaw, J.; Scholz, S.; Freedman, J.; Strähle, U.; Colbourne, J. K.; Weiss, C.; Dickmeis, T.
    2024. Naunyn-Schmiedeberg’s archives of pharmacology, 397 (Suppl. 1), S17–69. doi:10.1007/s00210-024-02974-3 
  21. Surface-Patterned DNA Origami Rulers Reveal Nanoscale Distance Dependency of the Epidermal Growth Factor Receptor Activation
    Mayer, I.; Karimian, T.; Gordiyenko, K.; Angelin, A.; Kumar, R.; Hirtz, M.; Mikut, R.; Reischl, M.; Stegmaier, J.; Zhou, L.; Ma, R.; Nienhaus, G. U.; Rabe, K. S.; Lanzerstorfer, P.; Domínguez, C. M.; Niemeyer, C. M.
    2024. Nano Letters, 24 (5), 1611–1619. doi:10.1021/acs.nanolett.3c04272 Full textFull text of the publication as PDF document 
  22. Der Zellkern als Vorbild für zukünftige DNA-Computerchips?
    Hilbert, L.
    2024. BIOspektrum, 30 (1), 19–22. doi:10.1007/s12268-024-2090-4 Full textFull text of the publication as PDF document 
  23. Caveolae disassemble upon membrane lesioning and foster cell survival
    Štefl, M.; Takamiya, M.; Middel, V.; Tekpınar, M.; Nienhaus, K.; Beil, T.; Rastegar, S.; Strähle, U.; Nienhaus, G. U.
    2024. iScience, 27 (2), 108849. doi:10.1016/j.isci.2024.108849 
  24. Photon-Efficient Aberration Correction for 3D-STED Imaging of Thick Biological Specimens Using Sensorless Adaptive Optics
    Dai, S.; Kobitski, A.; Barati Sedeh, A.; Eroğlu-Kayıkçı, S.; Hilbert, L.; Nienhaus, G. U.
    2024. ACS Photonics, 11 (1), 310–320. doi:10.1021/acsphotonics.3c01558 
  25. Measurement and classification of bold-shy behaviours in medaka fish
    Pierotti, S.; Brettell, I.; Fitzgerald, T.; Herder, C.; Aadepu, N.; Pylatiuk, C.; Wittbrodt, J.; Birney, E.; Loosli, F.
    2024. Cold Spring Harbor Laboratory. doi:10.1101/2024.10.18.618696 Full textFull text of the publication as PDF document 
  26. Development of a Benzophenone-Free Red Propolis Extract and Evaluation of Its Efficacy against Colon Carcinogenesis
    Squarisi, I. S.; Ribeiro, V. P.; Ribeiro, A. B.; Souza, L. T. M. de; Junqueira, M. de M.; Oliveira, K. M. de; Hayot, G.; Dickmeis, T.; Bastos, J. K.; Veneziani, R. C. S.; Ambrósio, S. R.; Tavares, D. C.
    2024. Pharmaceuticals, 17 (10), Art.-Nr.: 1340. doi:10.3390/ph17101340 Full textFull text of the publication as PDF document 
  27. Mapping the cellular expression patterns of vascular endothelial growth factor aa and bb genes and their receptors in the adult zebrafish brain during constitutive and regenerative neurogenesis
    Fernezelian, D.; Pfitsch, S.; Rastegar, S.; Diotel, N.
    2024. Neural Development, 19, Article no: 17. doi:10.1186/s13064-024-00195-1 Full textFull text of the publication as PDF document 
  28. Modular control of vertebrate axis segmentation in time and space
    Seleit, A.; Brettell, I.; Fitzgerald, T.; Vibe, C.; Loosli, F.; Wittbrodt, J.; Naruse, K.; Birney, E.; Aulehla, A.
    2024. The EMBO Journal, 43 (18), 4068–4091. doi:10.1038/s44318-024-00186-2 Full textFull text of the publication as PDF document 
  29. In Vivo Engineering and Transplantation of Axially Vascularized and Epithelialized Flaps in Rats
    Mayer, S. A.; Thomas, B.; Heuer, M.; Brune, J. C.; Eras, V.; Schuster, K.; Knoedler, L.; Schaefer, R. L.; Thiele, W.; Sleeman, J. P.; Dimmler, A.; Heimel, P.; Kneser, U.; Bigdeli, A. K.; Falkner, F.
    2024. Tissue Engineering - Part A. doi:10.1089/ten.tea.2024.0037 
  30. A comparative metabolomic investigation of different sections of Sicilian Citrus x limon (L.) Osbeck, characterization of bioactive metabolites, and evaluation of in vivo toxicity on zebrafish embryo
    Pagliari, S.; Sicari, M.; Pansera, L.; Guidi Nissim, W.; Mhalhel, K.; Rastegar, S.; Germanà, A.; Cicero, N.; Labra, M.; Cannavacciuolo, C.; Montalbano, G.; Campone, L.
    2024. Journal of Food Science, 89 (6), 3729–3744. doi:10.1111/1750-3841.17079 
  31. Reactive Oxygen Species Signaling and Oxidative Stress: Transcriptional Regulation and Evolution
    Hong, Y.; Boiti, A.; Vallone, D.; Foulkes, N. S.
    2024. Antioxidants, 13 (3), Art.-Nr.: 312. doi:10.3390/antiox13030312 Full textFull text of the publication as PDF document 
  32. Evaluating Toxicity of Chemicals using a Zebrafish Vibration Startle Response Screening System
    Hayot, G.; Marcato, D.; Cramer von Clausbruch, C. A.; Pace, G.; Strähle, U.; Colbourne, J. K.; Pylatiuk, C.; Peravali, R.; Weiss, C.; Scholz, S.; Dickmeis, T.
    2024. Journal of visualized experiments : JoVE, 203, Art.-Nr.: e66153. doi:10.3791/66153 
  33. Role of melanocortin system in the locomotor activity rhythms and melatonin secretion as revealed by agouti‐signalling protein ( asip1 ) overexpression in zebrafish
    Godino-Gimeno, A.; Leal, E.; Chivite, M.; Tormos, E.; Rotllant, J.; Vallone, D.; Foulkes, N. S.; Míguez, J. M.; Cerdá-Reverter, J. M.
    2024. Journal of Pineal Research, 76 (1), Art.-Nr.: e12939. doi:10.1111/jpi.12939 Full textFull text of the publication as PDF document 
  34. Comparison of Decellularized Human Dermal Scaffolds versus Bovine Collagen/Elastin Matrices for Engineering of Soft-Tissue Flaps
    Falkner, F.; Mayer, S. A.; Heuer, M.; Brune, J.; Helt, H.; Bigdeli, A. K.; Dimmler, A.; Heimel, P.; Thiele, W.; Sleeman, J. P.; Bergmeister, H.; Schneider, K. H.; Kneser, U.; Thomas, B.
    2024. Plastic and Reconstructive Surgery, 153 (1), 130 – 141. doi:10.1097/PRS.0000000000010511