Institute of Biological and Chemical Systems - Biological Information Processing
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Institute of Biological and Chemical Systems - Biological Information Processing
Institute of Biological and Chemical Systems - Biological Information Processing
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Research
Publications

Publications 2021


  1. A stochastic oscillator model simulates the entrainment of vertebrate cellular clocks by light.
    Kumpošt, V.; Vallone, D.; Gondi, S. B.; Foulkes, N. S.; Mikut, R.; Hilbert, L.
    2021. Scientific reports, 11 (1), Art.-Nr.: 14497. doi:10.1038/s41598-021-93913-2 Full textFull text of the publication as PDF document 
  2. HDL biodistribution and brain receptors in zebrafish, using HDLs as vectors for targeting endothelial cells and neural progenitors.
    Sulliman, N. C.; Ghaddar, B.; Gence, L.; Patche, J.; Rastegar, S.; Meilhac, O.; Diotel, N.
    2021. Scientific reports, 11 (1), Art. Nr.: 6439. doi:10.1038/s41598-021-85183-9 Full textFull text of the publication as PDF document 
  3. Transcription organizes euchromatin via microphase separation.
    Hilbert, L.; Sato, Y.; Kuznetsova, K.; Bianucci, T.; Kimura, H.; Jülicher, F.; Honigmann, A.; Zaburdaev, V.; Vastenhouw, N. L.
    2021. Nature Communications, 12 (1), Article no: 1360. doi:10.1038/s41467-021-21589-3 Full textFull text of the publication as PDF document 
  4. epiTracker: A Framework for Highly Reliable Particle Tracking for the Quantitative Analysis of Fish Movements in Tanks.
    Bruch, R.; Scheikl, P. M.; Mikut, R.; Loosli, F.; Reischl, M.
    2021. SLAS technology, 26 (4), 367–376. doi:10.1177/2472630320977454 
  5. Impact of the interplay between stemness features, p53 and pol iota on replication pathway choices.
    Ihle, M.; Biber, S.; Schroeder, I. S.; Blattner, C.; Deniz, M.; Damia, G.; Gottifredi, V.; Wiesmüller, L.
    2021. Nucleic acids research, 49 (13), 7457–7475. doi:10.1093/nar/gkab526 Full textFull text of the publication as PDF document 
  6. TRIMming Down Hormone-Driven Cancers: The Biological Impact of TRIM Proteins on Tumor Development, Progression and Prognostication.
    Pauletto, E.; Eickhoff, N.; Padrão, N.; Blattner, C.; Zwart, W.
    2021. Cells, 10 (6), Art.-Nr.: 1517. doi:10.3390/cells10061517 Full textFull text of the publication as PDF document 
  7. Long photoperiod impairs learning in male but not female medaka.
    López-Olmeda, J. F.; Zhao, H.; Reischl, M.; Pylatiuk, C.; Lucon-Xiccato, T.; Loosli, F.; Foulkes, N. S.
    2021. iScience, 102784. doi:10.1016/j.isci.2021.102784 
  8. Regulation of ddb2 expression in blind cavefish and zebrafish reveals plasticity in the control of sunlight-induced DNA damage repair.
    Zhao, H.; Li, H.; Du, J.; Di Mauro, G.; Lungu-Mitea, S.; Geyer, N.; Vallone, D.; Bertolucci, C.; Foulkes, N. S.
    2021. PLoS Genetics, 17 (2), Art.-Nr. e1009356. doi:10.1371/JOURNAL.PGEN.1009356 Full textFull text of the publication as PDF document 
  9. Id1 and Id3 Are Regulated Through Matrix‐Assisted Autocrine BMP Signaling and Represent Therapeutic Targets in Melanoma.
    Sedlmeier, G.; Al‐Rawi, V.; Buchert, J.; Yserentant, K.; Rothley, M.; Steshina, A.; Gräßle, S.; Wu, R.; Hurrle, T.; Richer, W.; Decraene, C.; Thiele, W.; Utikal, J.; Abuillan, W.; Tanaka, M.; Herten, D.; Hill, C. S.; Garvalov, B. K.; Jung, N.; Bräse, S.; Sleeman, J. P.
    2021. Advanced therapeutics, 4 (2), Art.-Nr.: 2000065. doi:10.1002/adtp.202000065 Full textFull text of the publication as PDF document 
  10. Effects of incremental endosulfan sulfate exposure and high fat diet on lipid metabolism, glucose homeostasis and gut microbiota in mice.
    Yan, J.; Wang, D.; Meng, Z.; Yan, S.; Teng, M.; Jia, M.; Li, R.; Tian, S.; Weiss, C.; Zhou, Z.; Zhu, W.
    2021. Environmental pollution, 268 (A), Art.-Nr.: 115697. doi:10.1016/j.envpol.2020.115697 
  11. Impact of Transition Metal Doping on the Structural and Optical Properties of Halide Perovskites.
    Wieghold, S.; Luo, Y.; Bieber, A. S.; Lackner, J.; Shirato, N.; Vanorman, Z. A.; Rosenmann, D.; Nienhaus, K.; Lai, B.; Nienhaus, G. U.; Rose, V.; Nienhaus, L.
    2021. Chemistry of Materials, 33 (15), 6099–6107. doi:10.1021/acs.chemmater.1c01645 
  12. Correction to: Assessment of incentivizing effects for cancer care frameworks.
    Haier, J.; Sleeman, J.; Schäfers, J.
    2021. Clinical & experimental metastasis. doi:10.1007/s10585-021-10107-w Full textFull text of the publication as PDF document 
  13. In Vivo Behavior of the Antibacterial Peptide Cyclo[RRRWFW], Explored Using a 3-Hydroxychromone-Derived Fluorescent Amino Acid.
    Afonin, S.; Koniev, S.; Préau, L.; Takamiya, M.; Strizhak, A. V.; Babii, O.; Hrebonkin, A.; Pivovarenko, V. G.; Dathe, M.; le Noble, F.; Rastegar, S.; Strähle, U.; Ulrich, A. S.; Komarov, I. V.
    2021. Frontiers in Chemistry, 9, Art. Nr.: 688446. doi:10.3389/fchem.2021.688446 Full textFull text of the publication as PDF document 
  14. The LIM domain protein nTRIP6 modulates the dynamics of myogenic differentiation.
    Norizadeh Abbariki, T.; Gonda, Z.; Kemler, D.; Urbanek, P.; Wagner, T.; Litfin, M.; Wang, Z.-Q.; Herrlich, P.; Kassel, O.
    2021. Scientific Reports, 11 (1), Art.Nr. 12904. doi:10.1038/s41598-021-92331-8 Full textFull text of the publication as PDF document 
  15. Regulation of p53 by E3s.
    Pan, M.; Blattner, C.
    2021. Cancers, 13 (4), Art.Nr. 745. doi:10.3390/cancers13040745 Full textFull text of the publication as PDF document 
  16. Fluorescence lifetime imaging microscopy (FLIM) of intracellular transport by means of doubly labelled siRNA architectures.
    Doll, L.; Lackner, J.; Rönicke, F.; Wagenknecht, H.-A.; Nienhaus, G. U.
    2021. ChemBioChem. doi:10.1002/cbic.202100150 
  17. Fluorescent proteins of the EosFP clade: intriguing marker tools with multiple photoactivation modes for advanced microscopy.
    Nienhaus, K.; Nienhaus, G. U.
    2021. RSC chemical biology, 2 (3), 796–814. doi:10.1039/D1CB00014D Full textFull text of the publication as PDF document 
  18. Multi-Dimensional Transcriptome Analysis Reveals Modulation of Cholesterol Metabolism as Highly Integrated Response to Brain Injury.
    Gourain, V.; Armant, O.; Lübke, L.; Diotel, N.; Rastegar, S.; Strähle, U.
    2021. Frontiers in neuroscience, 15, Article no: 671249. doi:10.3389/fnins.2021.671249 Full textFull text of the publication as PDF document 
  19. Efficiency of bulk perovskite-sensitized upconversion: Illuminating matters.
    Vanorman, Z. A.; Lackner, J.; Wieghold, S.; Nienhaus, K.; Nienhaus, G. U.; Nienhaus, L.
    2021. Applied Physics Letters, 118 (20), Art.-Nr.: 203903. doi:10.1063/5.0050185 
  20. Axial line-scanning stimulated emission depletion fluorescence correlation spectroscopy.
    Gao, P.; Nienhaus, G. U.
    2021. Optics Letters, 46 (9), 2184–2187. doi:10.1364/OL.420765 
  21. The hierarchical packing of euchromatin domains can be described as multiplicative cascades.
    Noa, A.; Kuan, H.-S.; Aschmann, V.; Zaburdaev, V.; Hilbert, L.
    2021. PLoS Computational Biology. doi:10.1371/journal.pcbi.1008974 Full textFull text of the publication as PDF document 
  22. Functional characterization of circulating tumor cells (CTCs) from metastatic ER+/HER2− breast cancer reveals dependence on HER2 and FOXM1 for endocrine therapy resistance and tumor cell survival: Implications for treatment of ER+/HER2− breast cancer.
    Roßwag, S.; Cotarelo, C. L.; Pantel, K.; Riethdorf, S.; Sleeman, J. P.; Schmidt, M.; Thaler, S.
    2021. Cancers, 13 (8), Art.-Nr.: 1810. doi:10.3390/cancers13081810 Full textFull text of the publication as PDF document 
  23. Regulatory Function of Sympathetic Innervation on the Endo/Lysosomal Trafficking of Acetylcholine Receptor.
    Straka, T.; Schröder, C.; Roos, A.; Kollipara, L.; Sickmann, A.; Williams, M. P. I.; Hafner, M.; Khan, M. M.; Rudolf, R.
    2021. Frontiers in Physiology, 12, Art.-Nr.: 626707. doi:10.3389/fphys.2021.626707 Full textFull text of the publication as PDF document 
  24. Finding Nemo’s clock reveals switch from nocturnal to diurnal activity.
    Schalm, G.; Bruns, K.; Drachenberg, N.; Geyer, N.; Foulkes, N. S.; Bertolucci, C.; Gerlach, G.
    2021. Scientific Reports, 11 (1), Art.-Nr.: 6801. doi:10.1038/s41598-021-86244-9 Full textFull text of the publication as PDF document 
  25. Wavelet-based background and noise subtraction for fluorescence microscopy images.
    Hüpfel, M.; Kobitski, A. Y. U.; Zhang, W.; Nienhaus, G. U.
    2021. Biomedical Optics Express, 12 (2), 969–980. doi:10.1364/BOE.413181 Full textFull text of the publication as PDF document 
  26. Cellular Mechanisms Participating in Brain Repair of Adult Zebrafish and Mammals after Injury.
    Ghaddar, B.; Lübke, L.; Couret, D.; Rastegar, S.; Diotel, N.
    2021. Cells, 10 (2), 391. doi:10.3390/cells10020391 Full textFull text of the publication as PDF document 
  27. Super-resolution RNA imaging using a rhodamine-binding aptamer with fast exchange kinetics.
    Sunbul, M.; Lackner, J.; Martin, A.; Englert, D.; Hacene, B.; Grün, F.; Nienhaus, K.; Nienhaus, G. U.; Jäschke, A.
    2021. Nature Biotechnology, 5096. doi:10.1038/s41587-020-00794-3 
  28. Boron-rich, cytocompatible block copolymer nanoparticles by polymerization-induced self-assembly.
    Huang, L. C. S.; Le, D.; Hsiao, I. L.; Fritsch-Decker, S.; Hald, C.; Huang, S.-C.; Chen, J.-K.; Hwu, J. R.; Weiss, C.; Hsu, M.-H.; Delaittre, G.
    2021. Polymer chemistry, 12 (1), 50–56. doi:10.1039/d0py00710b Full textFull text of the publication as PDF document 
  29. Air–Liquid Interface Exposure of Lung Epithelial Cells to Low Doses of Nanoparticles to Assess Pulmonary Adverse Effects.
    Diabaté, S.; Armand, L.; Murugadoss, S.; Dilger, M.; Fritsch-Decker, S.; Schlager, C.; Béal, D.; Arnal, M.-E.; Biola-Clier, M.; Ambrose, S.; Mülhopt, S.; Paur, H.-R.; Lynch, I.; Valsami-Jones, E.; Carriere, M.; Weiss, C.
    2021. Nanomaterials, 11 (1), Art. Nr.: 65. doi:10.3390/nano11010065 Full textFull text of the publication as PDF document