Publications 2021


  1. TRIP6 functions in brain ciliogenesis
    Shukla, S.; Haenold, R.; Urbánek, P.; Frappart, L.; Monajembashi, S.; Grigaravicius, P.; Nagel, S.; Min, W. K.; Tapias, A.; Kassel, O.; Heuer, H.; Wang, Z.-Q.; Ploubidou, A.; Herrlich, P.
    2021. Nature Communications, 12 (1), Art.-Nr.: 5887. doi:10.1038/s41467-021-26057-6 Full textFull text of the publication as PDF document 
  2. A stochastic oscillator model simulates the entrainment of vertebrate cellular clocks by light
    Kumpošt, V.; Vallone, D.; Gondi, S. B.; Foulkes, N. S.; Mikut, R.; Hilbert, L.
    2021. Scientific reports, 11 (1), Art.-Nr.: 14497. doi:10.1038/s41598-021-93913-2 Full textFull text of the publication as PDF document 
  3. HDL biodistribution and brain receptors in zebrafish, using HDLs as vectors for targeting endothelial cells and neural progenitors
    Sulliman, N. C.; Ghaddar, B.; Gence, L.; Patche, J.; Rastegar, S.; Meilhac, O.; Diotel, N.
    2021. Scientific reports, 11 (1), Art. Nr.: 6439. doi:10.1038/s41598-021-85183-9 Full textFull text of the publication as PDF document 
  4. Transcription organizes euchromatin via microphase separation
    Hilbert, L.; Sato, Y.; Kuznetsova, K.; Bianucci, T.; Kimura, H.; Jülicher, F.; Honigmann, A.; Zaburdaev, V.; Vastenhouw, N. L.
    2021. Nature Communications, 12 (1), Article no: 1360. doi:10.1038/s41467-021-21589-3 Full textFull text of the publication as PDF document 
  5. Agglomeration State of Titanium-Dioxide (TiO2) Nanomaterials Influences the Dose Deposition and Cytotoxic Responses in Human Bronchial Epithelial Cells at the Air-Liquid Interface
    Murugadoss, S.; Mülhopt, S.; Diabaté, S.; Ghosh, M.; Paur, H.-R.; Stapf, D.; Weiss, C.; Hoet, P. H.
    2021. Nanomaterials, 11 (12), 3226. doi:10.3390/nano11123226 Full textFull text of the publication as PDF document 
  6. RASSF1A-Mediated Suppression of Estrogen Receptor Alpha (ERα)-Driven Breast Cancer Cell Growth Depends on the Hippo-Kinases LATS1 and 2
    Roßwag, S.; Sleeman, J. P.; Thaler, S.
    2021. Cells, 10 (11), Art. Nr.: 2868. doi:10.3390/cells10112868 Full textFull text of the publication as PDF document 
  7. Correction to: EGFR/Ras-induced CCL20 production modulates the tumour microenvironment
    Hippe, A.; Braun, S. A.; Oláh, P.; Gerber, P. A.; Schorr, A.; Seeliger, S.; Holtz, S.; Jannasch, K.; Pivarcsi, A.; Buhren, B.; Schrumpf, H.; Kislat, A.; Bünemann, E.; Steinhoff, M.; Fischer, J.; Lira, S. A.; Boukamp, P.; Hevezi, P.; Stoecklein, N. H.; Hoffmann, T.; Alves, F.; Sleeman, J.; Bauer, T.; Klufa, J.; Amberg, N.; Sibilia, M.; Zlotnik, A.; Müller-Homey, A.; Homey, B.
    2021. British journal of cancer, 125 (9), 1318. doi:10.1038/s41416-021-01563-y Full textFull text of the publication as PDF document 
  8. CFC - CarbonFibreCycle Carbonfasern im Kreislauf – Freisetzungsverhalten und Toxizität bei thermischer und mechanischer Behandlung
    Mülhopt, S.; Weiss, C.; Adler, S.; Baumann, W.; Diabaté, S.; Fritsch-Decker. Susanne; Friesen, A.; Goßmann, A.-K.; Gutmann, B.; Güttler, B.; Hauser, M.; Hartwig, A.; Hee, J.; Krebs, T.; Mahl, J.; Quicker, P.; Schlager, C.; Weis, F.; Wexler, M.; Stapf, D.
    2021. "NanoCare‐Clustertreffen 2021 - Vorstellung der Projekte aus der BMBF‐Fördermaßnahme NanoCare4.0. Book of Abstracts". Hrsg. DECHEMA Gesellschaft für Chemische Technik und Biotechnologie e.V Full textFull text of the publication as PDF document 
  9. Development of a Benzothiazole Scaffold-Based Androgen Receptor N-Terminal Inhibitor for Treating Androgen-Responsive Prostate Cancer
    Kuznik, N. C.; Solozobova, V.; Jung, N.; Gräßle, S.; Lei, Q.; Lewandowski, E. M.; Munuganti, R.; Zoubeidi, A.; Chen, Y.; Bräse, S.; Cato, A. C. B.
    2021. ACS Chemical Biology, 16 (11), 2103–2108. doi:10.1021/acschembio.1c00390 
  10. Fluorescence lifetime imaging microscopy (FLIM) of intracellular transport by means of doubly labelled siRNA architectures
    Doll, L.; Lackner, J.; Rönicke, F.; Wagenknecht, H.-A.; Nienhaus, G. U.
    2021. ChemBioChem, 22 (15), 2561–2567. doi:10.1002/cbic.202100150 Full textFull text of the publication as PDF document 
  11. epiTracker: A Framework for Highly Reliable Particle Tracking for the Quantitative Analysis of Fish Movements in Tanks
    Bruch, R.; Scheikl, P. M.; Mikut, R.; Loosli, F.; Reischl, M.
    2021. SLAS technology, 26 (4), 367–376. doi:10.1177/2472630320977454 
  12. Impact of the interplay between stemness features, p53 and pol iota on replication pathway choices
    Ihle, M.; Biber, S.; Schroeder, I. S.; Blattner, C.; Deniz, M.; Damia, G.; Gottifredi, V.; Wiesmüller, L.
    2021. Nucleic acids research, 49 (13), 7457–7475. doi:10.1093/nar/gkab526 Full textFull text of the publication as PDF document 
  13. Correction to: Assessment of incentivizing effects for cancer care frameworks
    Haier, J.; Sleeman, J.; Schäfers, J.
    2021. Clinical & experimental metastasis, 38, Art.Nr. 429. doi:10.1007/s10585-021-10107-w Full textFull text of the publication as PDF document 
  14. TRIMming Down Hormone-Driven Cancers: The Biological Impact of TRIM Proteins on Tumor Development, Progression and Prognostication
    Pauletto, E.; Eickhoff, N.; Padrão, N.; Blattner, C.; Zwart, W.
    2021. Cells, 10 (6), Art.-Nr.: 1517. doi:10.3390/cells10061517 Full textFull text of the publication as PDF document 
  15. Long photoperiod impairs learning in male but not female medaka
    López-Olmeda, J. F.; Zhao, H.; Reischl, M.; Pylatiuk, C.; Lucon-Xiccato, T.; Loosli, F.; Foulkes, N. S.
    2021. iScience, 24 (7), Art. Nr.: 102784. doi:10.1016/j.isci.2021.102784 Full textFull text of the publication as PDF document 
  16. Photoreceptor Diversification Accompanies the Evolution of Anthozoa
    Gornik, S. G.; Bergheim, B. G.; Benoit, M.; Stamatakis, A.; Foulkes, N. S.; Guse, A.
    2021. Molecular biology and evolution, 38 (5), 1744–1760. doi:10.1093/molbev/msaa304 Full textFull text of the publication as PDF document 
  17. Regulation of ddb2 expression in blind cavefish and zebrafish reveals plasticity in the control of sunlight-induced DNA damage repair
    Zhao, H.; Li, H.; Du, J.; Di Mauro, G.; Lungu-Mitea, S.; Geyer, N.; Vallone, D.; Bertolucci, C.; Foulkes, N. S.
    2021. PLoS Genetics, 17 (2), Art.-Nr. e1009356. doi:10.1371/JOURNAL.PGEN.1009356 Full textFull text of the publication as PDF document 
  18. Id1 and Id3 Are Regulated Through Matrix‐Assisted Autocrine BMP Signaling and Represent Therapeutic Targets in Melanoma
    Sedlmeier, G.; Al-Rawi, V.; Buchert, J.; Yserentant, K.; Rothley, M.; Steshina, A.; Gräßle, S.; Wu, R.-L.; Hurrle, T.; Richer, W.; Decraene, C.; Thiele, W.; Utikal, J.; Abuillan, W.; Tanaka, M.; Herten, D.-P.; Hill, C. S.; Garvalov, B. K.; Jung, N.; Bräse, S.; Sleeman, J. P.
    2021. Advanced therapeutics, 4 (2), Art.-Nr.: 2000065. doi:10.1002/adtp.202000065 Full textFull text of the publication as PDF document 
  19. Cancer microenvironment and genomics: evolution in process
    Leong, S. P.; Witz, I. P.; Sagi-Assif, O.; Izraely, S.; Sleeman, J.; Piening, B.; Fox, B. A.; Bifulco, C. B.; Martini, R.; Newman, L.; Davis, M.; Sanders, L. M.; Haussler, D.; Vaske, O. M.; Witte, M.
    2021. Clinical & experimental metastasis, 39, 85–99. doi:10.1007/s10585-021-10097-9 
  20. In Vitro and In Vivo Toxicity Evaluation of Natural Products with Potential Applications as Biopesticides
    Sangermano, F.; Masi, M.; Kumar, A.; Peravali, R.; Tuzi, A.; Cimmino, A.; Vallone, D.; Giamundo, G.; Conte, I.; Evidente, A.; Calabrò, V.
    2021. Toxins, 13 (11), Art. Nr.: 805. doi:10.3390/toxins13110805 Full textFull text of the publication as PDF document 
  21. Methylmercury-induced hair cell loss requires hydrogen peroxide production and leukocytes in zebrafish embryos
    Luo, Z.; Guo, S.; Ho, N. Y.; Takamiya, M.; Strähle, U.; Yang, L.
    2021. Toxicology Letters, 356, 151–160. doi:10.1016/j.toxlet.2021.12.012 
  22. Toxicology and Biocompatibility of Nanomaterials : Editorial
    Weiss, C.; Diabaté, S.
    2021. Nanomaterials, 11 (11), Art.-Nr.: 3110. doi:10.3390/nano11113110 Full textFull text of the publication as PDF document 
  23. Quantitative detection of disseminated melanoma cells by trp-1 transcript analysis reveals stochastic distribution of pulmonary metastases
    Kyjacova, L.; Saup, R.; Rothley, M.; Schmaus, A.; Wagner, T.; Boßerhoff, A.; Garvalov, B. K.; Thiele, W.; Sleeman, J. P.
    2021. Journal of Clinical Medicine, 10 (22), Art.Nr. 5459. doi:10.3390/jcm10225459 Full textFull text of the publication as PDF document 
  24. Exploring the energy landscape of a SAM-I riboswitch
    Manz, C.; Kobitski, A. Y.; Samanta, A.; Nienhaus, K.; Jäschke, A.; Nienhaus, G. U.
    2021. Journal of Biological Physics, 47, 371–386. doi:10.1007/s10867-021-09584-7 Full textFull text of the publication as PDF document 
  25. Strain-Specific Liver Metabolite Profiles in Medaka
    Soergel, H.; Loosli, F.; Muhle-Goll, C.
    2021. Metabolites, 11 (11), Art.-Nr.: 744. doi:10.3390/metabo11110744 Full textFull text of the publication as PDF document 
  26. Neuron-Radial Glial Cell Communication via BMP/Id1 Signaling Is Key to Long-Term Maintenance of the Regenerative Capacity of the Adult Zebrafish Telencephalon
    Zhang, G.; Lübke, L.; Chen, F.; Beil, T.; Takamiya, M.; Diotel, N.; Strähle, U.; Rastegar, S.
    2021. Cells, 10 (10), Art.-Nr.: 2794. doi:10.3390/cells10102794 Full textFull text of the publication as PDF document 
  27. IER2-induced senescence drives melanoma invasion through osteopontin
    Kyjacova, L.; Saup, R.; Rönsch, K.; Wallbaum, S.; Dukowic-Schulze, S.; Foss, A.; Scherer, S. D.; Rothley, M.; Neeb, A.; Grau, N.; Thiele, W.; Thaler, S.; Cremers, N.; Sticht, C.; Gretz, N.; Garvalov, B. K.; Utikal, J.; Sleeman, J. P.
    2021. Oncogene, 40, 6494–6412. doi:10.1038/s41388-021-02027-6 Full textFull text of the publication as PDF document 
  28. RNA polymerase II clusters form in line with surface condensation on regulatory chromatin
    Pancholi, A.; Klingberg, T.; Zhang, W.; Prizak, R.; Mamontova, I.; Noa, A.; Sobucki, M.; Kobitski, A. Y.; Nienhaus, G. U.; Zaburdaev, V.; Hilbert, L.
    2021. Molecular Systems Biology, 17 (9), Art.Nr. e10272. doi:10.15252/msb.202110272 Full textFull text of the publication as PDF document 
  29. Period 2: A Regulator of Multiple Tissue-Specific Circadian Functions
    Ruggiero, G.; Ben-Moshe Livne, Z.; Wexler, Y.; Geyer, N.; Vallone, D.; Gothilf, Y.; Foulkes, N. S.
    2021. Frontiers in Molecular Neuroscience, 14, Art.Nr. 718387. doi:10.3389/fnmol.2021.718387 Full textFull text of the publication as PDF document 
  30. Impact of Transition Metal Doping on the Structural and Optical Properties of Halide Perovskites
    Wieghold, S.; Luo, Y.; Bieber, A. S.; Lackner, J.; Shirato, N.; Vanorman, Z. A.; Rosenmann, D.; Nienhaus, K.; Lai, B.; Nienhaus, G. U.; Rose, V.; Nienhaus, L.
    2021. Chemistry of Materials, 33 (15), 6099–6107. doi:10.1021/acs.chemmater.1c01645 
  31. In Vivo Behavior of the Antibacterial Peptide Cyclo[RRRWFW], Explored Using a 3-Hydroxychromone-Derived Fluorescent Amino Acid
    Afonin, S.; Koniev, S.; Préau, L.; Takamiya, M.; Strizhak, A. V.; Babii, O.; Hrebonkin, A.; Pivovarenko, V. G.; Dathe, M.; Noble, F. le; Rastegar, S.; Strähle, U.; Ulrich, A. S.; Komarov, I. V.
    2021. Frontiers in Chemistry, 9, Art. Nr.: 688446. doi:10.3389/fchem.2021.688446 Full textFull text of the publication as PDF document 
  32. The LIM domain protein nTRIP6 modulates the dynamics of myogenic differentiation
    Norizadeh Abbariki, T.; Gonda, Z.; Kemler, D.; Urbanek, P.; Wagner, T.; Litfin, M.; Wang, Z.-Q.; Herrlich, P.; Kassel, O.
    2021. Scientific Reports, 11 (1), Art.Nr. 12904. doi:10.1038/s41598-021-92331-8 Full textFull text of the publication as PDF document 
  33. Regulation of p53 by E3s
    Pan, M.; Blattner, C.
    2021. Cancers, 13 (4), Art.Nr. 745. doi:10.3390/cancers13040745 Full textFull text of the publication as PDF document 
  34. Fluorescent proteins of the EosFP clade: intriguing marker tools with multiple photoactivation modes for advanced microscopy
    Nienhaus, K.; Nienhaus, G. U.
    2021. RSC chemical biology, 2 (3), 796–814. doi:10.1039/D1CB00014D Full textFull text of the publication as PDF document 
  35. Multi-Dimensional Transcriptome Analysis Reveals Modulation of Cholesterol Metabolism as Highly Integrated Response to Brain Injury
    Gourain, V.; Armant, O.; Lübke, L.; Diotel, N.; Rastegar, S.; Strähle, U.
    2021. Frontiers in neuroscience, 15, Article no: 671249. doi:10.3389/fnins.2021.671249 Full textFull text of the publication as PDF document 
  36. Efficiency of bulk perovskite-sensitized upconversion: Illuminating matters
    Vanorman, Z. A.; Lackner, J.; Wieghold, S.; Nienhaus, K.; Nienhaus, G. U.; Nienhaus, L.
    2021. Applied Physics Letters, 118 (20), Art.-Nr.: 203903. doi:10.1063/5.0050185 
  37. Axial line-scanning stimulated emission depletion fluorescence correlation spectroscopy
    Gao, P.; Nienhaus, G. U.
    2021. Optics Letters, 46 (9), 2184–2187. doi:10.1364/OL.420765 
  38. The hierarchical packing of euchromatin domains can be described as multiplicative cascades
    Noa, A.; Kuan, H.-S.; Aschmann, V.; Zaburdaev, V.; Hilbert, L.
    2021. PLoS Computational Biology, 17 (5), e1008974. doi:10.1371/journal.pcbi.1008974 Full textFull text of the publication as PDF document 
  39. Functional characterization of circulating tumor cells (CTCs) from metastatic ER+/HER2− breast cancer reveals dependence on HER2 and FOXM1 for endocrine therapy resistance and tumor cell survival: Implications for treatment of ER+/HER2− breast cancer
    Roßwag, S.; Cotarelo, C. L.; Pantel, K.; Riethdorf, S.; Sleeman, J. P.; Schmidt, M.; Thaler, S.
    2021. Cancers, 13 (8), Art.-Nr.: 1810. doi:10.3390/cancers13081810 Full textFull text of the publication as PDF document 
  40. Regulatory Function of Sympathetic Innervation on the Endo/Lysosomal Trafficking of Acetylcholine Receptor
    Straka, T.; Schröder, C.; Roos, A.; Kollipara, L.; Sickmann, A.; Williams, M. P. I.; Hafner, M.; Khan, M. M.; Rudolf, R.
    2021. Frontiers in Physiology, 12, Art.-Nr.: 626707. doi:10.3389/fphys.2021.626707 Full textFull text of the publication as PDF document 
  41. Finding Nemo’s clock reveals switch from nocturnal to diurnal activity
    Schalm, G.; Bruns, K.; Drachenberg, N.; Geyer, N.; Foulkes, N. S.; Bertolucci, C.; Gerlach, G.
    2021. Scientific Reports, 11 (1), Art.-Nr.: 6801. doi:10.1038/s41598-021-86244-9 Full textFull text of the publication as PDF document 
  42. Wavelet-based background and noise subtraction for fluorescence microscopy images
    Hüpfel, M.; Kobitski, A. Y. U.; Zhang, W.; Nienhaus, G. U.
    2021. Biomedical Optics Express, 12 (2), 969–980. doi:10.1364/BOE.413181 Full textFull text of the publication as PDF document 
  43. Cellular Mechanisms Participating in Brain Repair of Adult Zebrafish and Mammals after Injury
    Ghaddar, B.; Lübke, L.; Couret, D.; Rastegar, S.; Diotel, N.
    2021. Cells, 10 (2), 391. doi:10.3390/cells10020391 Full textFull text of the publication as PDF document 
  44. Super-resolution RNA imaging using a rhodamine-binding aptamer with fast exchange kinetics
    Sunbul, M.; Lackner, J.; Martin, A.; Englert, D.; Hacene, B.; Grün, F.; Nienhaus, K.; Nienhaus, G. U.; Jäschke, A.
    2021. Nature Biotechnology, 5096. doi:10.1038/s41587-020-00794-3 
  45. Boron-rich, cytocompatible block copolymer nanoparticles by polymerization-induced self-assembly
    Huang, L. C. S.; Le, D.; Hsiao, I. L.; Fritsch-Decker, S.; Hald, C.; Huang, S.-C.; Chen, J.-K.; Hwu, J. R.; Weiss, C.; Hsu, M.-H.; Delaittre, G.
    2021. Polymer chemistry, 12 (1), 50–56. doi:10.1039/d0py00710b Full textFull text of the publication as PDF document 
  46. Air–Liquid Interface Exposure of Lung Epithelial Cells to Low Doses of Nanoparticles to Assess Pulmonary Adverse Effects
    Diabaté, S.; Armand, L.; Murugadoss, S.; Dilger, M.; Fritsch-Decker, S.; Schlager, C.; Béal, D.; Arnal, M.-E.; Biola-Clier, M.; Ambrose, S.; Mülhopt, S.; Paur, H.-R.; Lynch, I.; Valsami-Jones, E.; Carriere, M.; Weiss, C.
    2021. Nanomaterials, 11 (1), Art. Nr.: 65. doi:10.3390/nano11010065 Full textFull text of the publication as PDF document 
  47. Effects of incremental endosulfan sulfate exposure and high fat diet on lipid metabolism, glucose homeostasis and gut microbiota in mice
    Yan, J.; Wang, D.; Meng, Z.; Yan, S.; Teng, M.; Jia, M.; Li, R.; Tian, S.; Weiss, C.; Zhou, Z.; Zhu, W.
    2021. Environmental pollution, 268 (A), Art.-Nr.: 115697. doi:10.1016/j.envpol.2020.115697