Publications 2023


  1. Congratulations to Prof. em. Garth L. Nicolson – co-founder of Clinical and Experimental Metastasis
    Haier, J.; Sleeman, J.
    2023. Clinical & Experimental Metastasis, 40 (6), 443–444. doi:10.1007/s10585-023-10239-1 
  2. TRIM25 targets p300 for degradation
    Elabd, S.; Pauletto, E.; Solozobova, V.; Eickhoff, N.; Padrao, N.; Zwart, W.; Blattner, C.
    2023. Life Science Alliance, 6 (12), e202301980. doi:10.26508/lsa.202301980 Full textFull text of the publication as PDF document 
  3. Estrogenic regulation of claudin 5 and tight junction protein 1 gene expression in zebrafish: A role on blood-brain barrier?
    Pellegrini, E.; Fernezelian, D.; Malleret, C.; Gueguen, M. M.; Patche-Firmin, J.; Rastegar, S.; Meilhac, O.; Diotel, N.
    2023. The journal of comparative neurology, 531 (17), 1828–1845. doi:10.1002/cne.25543 Full textFull text of the publication as PDF document 
  4. CD44: a driver of cellular plasticity in colorectal cancer. PhD dissertation
    Sonnentag, S. J.
    2023, November 6. Karlsruher Institut für Technologie (KIT) 
  5. Development and Validation of a New BAG-1L–Specific Antibody to Quantify BAG-1L Protein Expression in Advanced Prostate Cancer
    Neeb, A.; Figueiredo, I.; Gurel, B.; Nava Rodrigues, D.; Rekowski, J.; Riisnaes, R.; Ferreira, A.; Miranda, S.; Crespo, M.; Westaby, D.; de Los Dolores Fenor de La Maza, M.; Guo, C.; Carmichael, J.; Grochot, R.; Tunariu, N.; Cato, A. C. B.; Plymate, S. R.; de Bono, J. S.; Sharp, A.
    2023. Laboratory Investigation, 103 (11), Article no: 100245. doi:10.1016/j.labinv.2023.100245 Full textFull text of the publication as PDF document 
  6. Stimulated emission double depletion nanoscopy with background correction at the single-pixel level
    Sedeh, A. B.; Kobitski, A.; Dai, S.; Eroğlu-Kayıkçı, S.; Nienhaus, K.; Hilbert, L.; Nienhaus, G. U.
    2023. Optics Letters, 48 (21), 5791–5794. doi:10.1364/OL.502001 
  7. AI-based automated active learning for discovery of hidden dynamic processes: A use case in light microscopy
    Friederich, N.; Yamachui Sitcheu, A. J.; Neumann, O.; Eroglu-Kayıkçı, S.; Prizak, R.; Hilbert, L.; Mikut, R.
    2023. Proceedings-33. Workshop Computational Intelligence: Berlin, 23.-24. November 2023, 31–51, KIT Scientific Publishing. doi:10.48550/arXiv.2310.04461 Full textFull text of the publication as PDF document 
  8. Establishment of cell lines from individual zebrafish embryos
    Geyer, N.; Kaminsky, S.; Confino, S.; Livne, Z. B.-M.; Gothilf, Y.; Foulkes, N. S.; Vallone, D.
    2023. Laboratory Animals, 57 (5), 518–528. doi:10.1177/00236772231157162 
  9. Amphiphiles Formed from Synthetic DNA-Nanomotifs Mimic the Stepwise Dispersal of Transcriptional Clusters in the Cell Nucleus
    Tschurikow, X.; Gadzekpo, A.; Tran, M. P.; Chatterjee, R.; Sobucki, M.; Zaburdaev, V.; Göpfrich, K.; Hilbert, L.
    2023. Nano Letters, 23 (17), 7815–7824. doi:10.1021/acs.nanolett.3c01301 
  10. Systems toxicology of complex wood combustion aerosol reveals gaseous carbonyl compounds as critical constituents
    Dilger, M.; Armant, O.; Ramme, L.; Mülhopt, S.; Sapcariu, S. C.; Schlager, C.; Dilger, E.; Reda, A.; Orasche, J.; Schnelle-Kreis, J.; Conlon, T. M.; Yildirim, A. Ö.; Hartwig, A.; Zimmermann, R.; Hiller, K.; Diabaté, S.; Paur, H.-R.; Weiss, C.
    2023. Environment International, 179, Art.-Nr.: 108169. doi:10.1016/j.envint.2023.108169 Full textFull text of the publication as PDF document 
  11. Key Role of Choline Head Groups in Large Unilamellar Phospholipid Vesicles for the Interaction with and Rupture by Silica Nanoparticles
    Leibe, R.; Fritsch-Decker, S.; Gussmann, F.; Wagbo, A. M.; Wadhwani, P.; Diabaté, S.; Wenzel, W.; Ulrich, A. S.; Weiss, C.
    2023. Small, 19 (34), Artkl.Nr.: 2207593. doi:10.1002/smll.202207593 Full textFull text of the publication as PDF document 
  12. sox1a:eGFP transgenic line and single-cell transcriptomics reveal the origin of zebrafish intraspinal serotonergic neurons
    Chen, F.; Köhler, M.; Cucun, G.; Takamiya, M.; Kizil, C.; Cosacak, M. I.; Rastegar, S.
    2023. iScience, 26 (8), Artkl. Nr.: 107342. doi:10.1016/j.isci.2023.107342 Full textFull text of the publication as PDF document 
  13. Robot-Assisted Full Automation Interface: Touch-Response On Zebrafish Larvae. PhD dissertation
    Wang, Y.
    2023, August 10. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000161245 Full textFull text of the publication as PDF document 
  14. Photobiology: Fish eggs go sunny side up
    Foulkes, N. S.
    2023. Current Biology, 33 (15), R810–R812. doi:10.1016/j.cub.2023.06.078 
  15. CEMIP ( HYBID , KIAA1199 ): structure, function and expression in health and disease
    Spataro, S.; Guerra, C.; Cavalli, A.; Sgrignani, J.; Sleeman, J.; Poulain, L.; Boland, A.; Scapozza, L.; Moll, S.; Prunotto, M.
    2023. The FEBS Journal, 290 (16), 3946–3962. doi:10.1111/febs.16600 Full textFull text of the publication as PDF document 
  16. Fat Grafts Show Higher Hypoxia, Angiogenesis, Adipocyte Proliferation, and Macrophage Infiltration than Flaps in a Pilot Mouse Study
    Thomas, B.; Warszawski, J.; Falkner, F.; Bleichert, S.; Haug, V.; Bigdeli, A. K.; Schulte, M.; Hoffmann, S. H. L.; Garvalov, B. K.; Schreiber, C.; Takamiya, M.; Sleeman, J. P.; Schmidt, V. J.; Kneser, U.; Pichler, B. J.; Dimmler, A.; Thiele, W.
    2023. Plastic and reconstructive surgery, 152 (1), 96e – 109e. doi:10.1097/PRS.0000000000010146 
  17. Identification of an imidazopyridine-based compound as an oral selective estrogen receptor degrader for breast cancer therapy
    Pan, M.; Solozobova, V.; Kuznik, N. C.; Jung, N.; Graessle, S.; Gourain, V.; Heneka, Y. M.; Cramer von Clausbruch, C. A.; Fuhr, O.; Munuganti, R. S. N.; Maddalo, D.; Blattner, C.; Neeb, A.; Sharp, A.; Cato, L.; Weiss, C.; Jeselsohn, R. M.; Orian-Rousseau, V.; Bräse, S.; Cato, A. C. B.
    2023. Cancer Research Communications, 3 (7), 1378–1396. doi:10.1158/2767-9764.CRC-23-0111 Full textFull text of the publication as PDF document 
  18. The Precision Toxicology initiative
    Weiss, C.; Dickmeis, T.; Hayot, G.; Peravali, R.; Cramer von Clausbruch, C.; Pace, G.
    2023. Toxicology Letters, 383, 33–42. doi:10.1016/j.toxlet.2023.05.004 
  19. Telomeres Fuse During Cardiomyocyte Maturation
    Aix, E.; Gallinat, A.; Yago-Díez, C.; Lucas, J.; Gómez, M. J.; Benguría, A.; Freitag, P.; Cortez-Toledo, E.; Fernández de Manuel, L.; García-Cuasimodo, L.; Sánchez-Iranzo, H.; Montoya, M. C.; Dopazo, A.; Sánchez-Cabo, F.; Mercader, N.; López, J. E.; Fleischmann, B. K.; Hesse, M.; Flores, I.
    2023. Circulation, 147 (21), 1634–1636. doi:10.1161/CIRCULATIONAHA.122.062229 
  20. Two-beam phase correlation spectroscopy: a label-free holographic method to quantify particle flow in biofluids
    Yu, L.; Wang, Y.; Wang, Y.; Zhuo, K.; Liu, M.; Nienhaus, G. U.; Gao, P.
    2023. Photonics Research, 11 (5), 757–764. doi:10.1364/PRJ.485575 
  21. Therapy resistance and metastasis
    Sleeman, J. P.
    2023. Clinical & Experimental Metastasis, 40 (2), 123–124. doi:10.1007/s10585-023-10205-x Full textFull text of the publication as PDF document 
  22. A DNA Segregation Module for Synthetic Cells
    Tran, M. P.; Chatterjee, R.; Dreher, Y.; Fichtler, J.; Jahnke, K.; Hilbert, L.; Zaburdaev, V.; Göpfrich, K.
    2023. Small, 19 (13), Art.-Nr.: 2202711. doi:10.1002/smll.202202711 Full textFull text of the publication as PDF document 
  23. Quantitative and qualitative assessment of cytotoxicity by automated fluorescence microscopy in human hepatocytes
    Cramer von Clausbruch, C.; Weiss, C.; Dickmeis, T.; Peravali, R.; Strähle, U.; Colbourne, J.; Hayot, G.; Scholz, S.; Lopez, R. M.
    2023. Naunyn-Schmiedeberg’s Archives of Pharmacology, 396 (S1), S61–62. doi:10.1007/s00210-023-02397-6 
  24. Phenotypic anchoring for OMICS-guided assessment of liver toxicity in zebrafish
    Dickmeis, T.; Hayot, G.; Clausbruch, C. C. von; Martinez Lopez, R.; Scholz, S.; Colbourne, J.; Strähle, U.; Weiss, C.; Peravali, R.
    2023. Naunyn-Schmiedeberg’s Archives of Pharmacology, 396 (S1), S61 
  25. Nickel oxide nanoparticles induce developmental neurotoxicity in zebrafish by triggering both apoptosis and ferroptosis
    Wang, Z.; Bi, Y.; Li, K.; Song, Z.; Pan, C.; Zhang, S.; Lan, X.; Foulkes, N. S.; Zhao, H.
    2023. Environmental Science: Nano, 10 (2), 640–655. doi:10.1039/d2en00757f 
  26. Vergleich der pulmonalen Wirkmechanismen partikulärer und faserförmiger Metall-basierter Nanomaterialien in submersen Studien und über ein air-liquid interface. PhD dissertation
    Wall, J.
    2023, February 16. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000155919 Full textFull text of the publication as PDF document 
  27. Ferroptosis contributes to nickel-induced developmental neurotoxicity in zebrafish
    Wang, Z.; Li, K.; Xu, Y.; Song, Z.; Lan, X.; Pan, C.; Zhang, S.; Foulkes, N. S.; Zhao, H.
    2023. Science of The Total Environment, 858, Article no: 160078. doi:10.1016/j.scitotenv.2022.160078 
  28. Distribution of microglia/immune cells in the brain of adult zebrafish in homeostatic and regenerative conditions: Focus on oxidative stress during brain repair
    Narra, S. S.; Rondeau, P.; Fernezelian, D.; Gence, L.; Ghaddar, B.; Bourdon, E.; Lefebvre d’Hellencourt, C.; Rastegar, S.; Diotel, N.
    2023. Journal of Comparative Neurology, 531 (2), 238–255. doi:10.1002/cne.25421 Full textFull text of the publication as PDF document 
  29. Comparing the Toxicological Responses of Pulmonary Air–Liquid Interface Models upon Exposure to Differentially Treated Carbon Fibers
    Friesen, A.; Fritsch-Decker, S.; Mülhopt, S.; Quarz, C.; Mahl, J.; Baumann, W.; Hauser, M.; Wexler, M.; Schlager, C.; Gutmann, B.; Krebs, T.; Goßmann, A.-K.; Weis, F.; Hufnagel, M.; Stapf, D.; Hartwig, A.; Weiss, C.
    2023. International Journal of Molecular Sciences, 24 (3), Art.-Nr.: 1927. doi:10.3390/ijms24031927 Full textFull text of the publication as PDF document 
  30. The crosstalk between glomerular endothelial cells and podocytes controls their responses to metabolic stimuli in diabetic nephropathy
    Albrecht, M.; Sticht, C.; Wagner, T.; Hettler, S. A.; De La Torre, C.; Qiu, J.; Gretz, N.; Albrecht, T.; Yard, B.; Sleeman, J. P.; Garvalov, B. K.
    2023. Scientific Reports, 13, Article no: 17985. doi:10.1038/s41598-023-45139-7 Full textFull text of the publication as PDF document 
  31. Ketogenic diet does not promote triple-negative and luminal mammary tumor growth and metastasis in experimental mice
    Grube, M.; Dimmler, A.; Schmaus, A.; Saup, R.; Wagner, T.; Garvalov, B. K.; Sleeman, J. P.; Thiele, W.
    2023. Clinical and Experimental Metastasis. doi:10.1007/s10585-023-10249-z Full textFull text of the publication as PDF document 
  32. The role of host response to chemotherapy: resistance, metastasis and clinical implications
    Deo, A.; Sleeman, J. P.; Shaked, Y.
    2023. Clinical and Experimental Metastasis. doi:10.1007/s10585-023-10243-5 
  33. Negative phototaxis in the photosymbiotic sea anemone Aiptasia as a potential strategy to protect symbionts from photodamage
    Kishimoto, M.; Gornik, S. G.; Foulkes, N. S.; Guse, A.
    2023. Scientific Reports, 13 (1), Art.-Nr.: 17857. doi:10.1038/s41598-023-44583-9 Full textFull text of the publication as PDF document 
  34. Alternative lengthening of telomeres (ALT) cells viability is dependent on C-rich telomeric RNAs
    Rosso, I.; Jones-Weinert, C.; Rossiello, F.; Cabrini, M.; Brambillasca, S.; Munoz-Sagredo, L.; Lavagnino, Z.; Martini, E.; Tedone, E.; Garre’, M.; Aguado, J.; Parazzoli, D.; Mione, M.; Shay, J. W.; Mercurio, C.; d’Adda di Fagagna, F.
    2023. Nature Communications, 14, Art.-Nr.: 7086. doi:10.1038/s41467-023-42831-0 Full textFull text of the publication as PDF document 
  35. Insulin signaling promotes neurogenesis in the brain of adult zebrafish
    Gence, L.; Fernezelian, D.; Meilhac, O.; Rastegar, S.; Bascands, J.-L.; Diotel, N.
    2023. Journal of Comparative Neurology, 531 (17), 1812–1827. doi:10.1002/cne.25542 Full textFull text of the publication as PDF document 
  36. Fast-exchanging spirocyclic rhodamine probes for aptamer-based super-resolution RNA imaging
    Englert, D.; Burger, E.-M.; Grün, F.; Verma, M. S.; Lackner, J.; Lampe, M.; Bühler, B.; Schokolowski, J.; Nienhaus, G. U.; Jäschke, A.; Sunbul, M.
    2023. Nature Communications, 14 (1), Art.Nr.: 3879. doi:10.1038/s41467-023-39611-1 Full textFull text of the publication as PDF document 
  37. Increased Circulating Osteopontin Levels Promote Primary Tumour Growth, but Do Not Induce Metastasis in Melanoma
    Saup, R.; Nair, N.; Shen, J.; Schmaus, A.; Thiele, W.; Garvalov, B. K.; Sleeman, J. P.
    2023. Biomedicines, 11 (4), Art.-Nr.: 1038. doi:10.3390/biomedicines11041038 Full textFull text of the publication as PDF document 
  38. Detection of Cellular Senescence Reveals the Existence of Senescent Tumor Cells within Invasive Breast Carcinomas and Related Metastases
    Cotarelo, C. L.; Schad, A.; Schmidt, M.; Hönig, A.; Sleeman, J. P.; Thaler, S.
    2023. Cancers, 15 (6), Art.-Nr.: 1860. doi:10.3390/cancers15061860 Full textFull text of the publication as PDF document 
  39. A Yap-dependent mechanoregulatory program sustains cell migration for embryo axis assembly
    Sousa-Ortega, A.; Vázquez-Marín, J.; Sanabria-Reinoso, E.; Corbacho, J.; Polvillo, R.; Campoy-López, A.; Buono, L.; Loosli, F.; Almuedo-Castillo, M.; Martínez-Morales, J. R.
    2023. Nature Communications, 14, Art.-Nr.: 2804. doi:10.1038/s41467-023-38482-w Full textFull text of the publication as PDF document 
  40. Mechanistic Understanding of Protein Corona Formation around Nanoparticles: Old Puzzles and New Insights
    Nienhaus, K.; Nienhaus, G. U.
    2023. Small, 19 (28), Art.-Nr.: 2301663. doi:10.1002/smll.202301663 Full textFull text of the publication as PDF document 
  41. Acellular Human Placenta Small-Diameter Vessels as a Favorable Source of Super-Microsurgical Vascular Replacements: A Proof of Concept
    Falkner, F.; Mayer, S. A.; Thomas, B.; Zimmermann, S. O.; Walter, S.; Heimel, P.; Thiele, W.; Sleeman, J. P.; Bigdeli, A. K.; Kiss, H.; Podesser, B. K.; Kneser, U.; Bergmeister, H.; Schneider, K. H.
    2023. Bioengineering, 10 (3), Artkl.Nr.: 337. doi:10.3390/bioengineering10030337 Full textFull text of the publication as PDF document 
  42. N-Glycosylation of LRP6 by B3GnT2 Promotes Wnt/β-Catenin Signalling
    Xu, R.; Wang, X.; Safi, S.; Braunegger, N.; Hipgrave Ederveen, A.; Rottmann, M.; Wittbrodt, J.; Wuhrer, M.; Wesslowski, J.; Davidson, G.
    2023. Cells, 12 (6), Art.-Nr.: 863. doi:10.3390/cells12060863 Full textFull text of the publication as PDF document 
  43. Smuggling on the Nanoscale—Fusogenic Liposomes Enable Efficient RNA-Transfer with Negligible Immune Response In Vitro and In Vivo
    Hoffmann, M.; Gerlach, S.; Takamiya, M.; Tarazi, S.; Hersch, N.; Csiszár, A.; Springer, R.; Dreissen, G.; Scharr, H.; Rastegar, S.; Beil, T.; Strähle, U.; Merkel, R.; Hoffmann, B.
    2023. Pharmaceutics, 15 (4), Art.-Nr.: 1210. doi:10.3390/pharmaceutics15041210 
  44. CFC – Carbon Fibre Cycle Carbonfasern im Kreislauf – Freisetzungsverhalten und Toxizität bei thermischer und mechanischer Behandlung - Poster-Abstracts
    Baumann, W.; Bäger, D.; Deußen, O.; Diabaté, S.; Ellermann, N.; Emmerich, R.; Friesen, A.; Fritsch-Decker, S.; Gehrmann, H. J.; Gries, T.; Große, A.; Guth, J.; Hartwig, A.; Hauser, M.; Hofmann, M.; Hufnagel, M.; Kehren, D.; Krug, H. F.; Kühnel, D.; Leis, J.; Mahl, J.; Marquardt, C.; Mattern, A.; Merz, D.; Möller, N.; Nau, K.; Naumann, R.; Plitzko, S.; Schlögel, K.; Stapf, D.; Steinbach, C.; Weiss, C.; Wexler, M.
    2023 Full textFull text of the publication as PDF document 
  45. Noise facilitates entrainment of a population of uncoupled limit cycle oscillators
    Kumpost, V.; Hilbert, L.; Mikut, R.
    2023. Journal of The Royal Society Interface, 20 (198), Art.-Nr.: 20220781. doi:10.1098/rsif.2022.0781 Full textFull text of the publication as PDF document 
  46. Zebrafish: A Model Deciphering the Impact of Flavonoids on Neurodegenerative Disorders
    Mhalhel, K.; Sicari, M.; Chen, J.; Levanti, M.; Diotel, N.; Pansera, L.; Rastegar, S.; Germanà, A.; Montalbano, G.
    2023. Cells, 12 (2), Art.-Nr.: 252. doi:10.3390/cells12020252 Full textFull text of the publication as PDF document