Screening Center

Semi-automated & higher-throughput Chemical Screening Platforms

With the coding sequences of vertebrate genomes successfully mapped, the next scientific frontier is clear: establishing the functions of these gene products and decoding how they interact to control cellular activity.

• Systematic Gene Screening: The Screening Centre utilizes tailor-made parallel assays to systematically elucidate gene functions within cells and zebrafish models.
• A Worldwide Unique Resource: In conjunction with the European Zebrafish Resource Center (EZRC), we provide a one-of-a-kind infrastructure. We proudly operate as an open-access user facility, serving both our internal institute and the broader international research community.

startle IBCS-BIP
Vibration Startle Response

Robust screening system for the evaluation of neuromuscular and general toxicity in zebrafish embryos

Publication
pmr IBCS-BIP
Photomotor Response

Zebrafish embryos react to the light pulse through activating the nervous system. This platform allows us to screen neuroactive chemicals.

Publication
touch IBCS-BIP
Touch Response

Selected Publications


Evaluating Toxicity of Chemicals using a Zebrafish Vibration Startle Response Screening System
Hayot, G.; Marcato, D.; Cramer von Clausbruch, C. A.; Pace, G.; Strähle, U.; Colbourne, J. K.; Pylatiuk, C.; Peravali, R.; Weiss, C.; Scholz, S.; Dickmeis, T.
2024. Journal of visualized experiments : JoVE, 203, Art.-Nr.: e66153. doi:10.3791/66153
Quantitative and qualitative assessment of cytotoxicity by automated fluorescence microscopy in human hepatocytes
Cramer von Clausbruch, C.; Weiss, C.; Dickmeis, T.; Peravali, R.; Strähle, U.; Colbourne, J.; Hayot, G.; Scholz, S.; Lopez, R. M.
2023. Naunyn-Schmiedeberg’s Archives of Pharmacology, 396 (S1), S61–62. doi:10.1007/s00210-023-02397-6
Phenotypic anchoring for OMICS-guided assessment of liver toxicity in zebrafish
Dickmeis, T.; Hayot, G.; Clausbruch, C. C. von; Martinez Lopez, R.; Scholz, S.; Colbourne, J.; Strähle, U.; Weiss, C.; Peravali, R.
2023. Naunyn-Schmiedeberg’s Archives of Pharmacology, 396 (S1), S61
Surface functionalisation-dependent adverse effects of metal nanoparticles and nanoplastics in zebrafish embryos
Hansjosten, I.; Takamiya, M.; Rapp, J.; Reiner, L.; Fritsch-Decker, S.; Mattern, D.; Andraschko, S.; Anders, C.; Pace, G.; Dickmeis, T.; Peravali, R.; Rastegar, S.; Strähle, U.; Hsiao, I.-L.; Gilliland, D.; Ojea-Jimenez, I.; Ambrose, S. V. Y.; Belinga-Desaunay-Nault, M.-F. A.; Khan, A. O.; Lynch, I.; Valsami-Jones, E.; Diabaté, S.; Weiss, C.
2022. Environmental science / Nano, 91 (1), 375–392. doi:10.1039/d1en00299f
The HMG box transcription factors Sox1a and Sox1b specify a new class of glycinergic interneuron in the spinal cord of zebrafish embryos
Gerber, V.; Yang, L.; Takamiya, M.; Ribes, V.; Gourain, V.; Peravali, R.; Stegmaier, J.; Mikut, R.; Reischl, M.; Ferg, M.; Rastegar, S.; Strähle, U.
2019. Development <Cambridge>, 146 (4), dev172510. doi:10.1242/dev.172510
An automated screening method for detecting compounds with goitrogenic activity using transgenic zebrafish embryos
Jarque, S.; Fetter, E.; Veneman, W. J.; Spaink, H. P.; Peravali, R.; Strähle, U.; Scholz, S.
2018. PLoS one, 13 (8), e0203087. doi:10.1371/journal.pone.0203087
Zebrafish: A Pharmacogenetic Model for Anesthesia
Bedell, V.; Buglo, E.; Marcato, D.; Pylatiuk, C.; Mikut, R.; Stegmaier, J.; Scudder, W.; Wray, M.; Züchner, S.; Strähle, U.; Peravali, R.; Dallman, J. E.
2018. Methods in enzymology, 602, 189–209. doi:10.1016/bs.mie.2018.02.004

Confocal fluorescent microscopes

See deeper. Resolve finer. In 3D and beyond.
lsm IBCS-BIP
Zeiss LSM900 with Airyscan2

Fast and Gentle Confocal Super-Resolution for every colour.

dls IBCS-BIP
Leica DLS/SP8 (KCOP)

Inverted DMi8 microscope with a lightsheet unit; Ex lasers: 405-nm, 488-nm; 561-nm; 633-nm; Hamamatsu Flash 4.0 V3 sCMOS camera; L10x/0.30 W DLS; L25x/0.95 W DLS; 10x/0.40; 20x/0.75 IMM; 40x/1.10 W; 63x/1.30 Glyc.

dive IBCS-BIP
Leica DIVE/SP8 (KCOP)

2-photon laser (690-1040 nm); Upright microscope; 16x/0.6 IMM CORR VISIR, 20x/0.5 W, 40x/0.80 W, 63x/0.9 W; 4-Tune 3-channels (2x HyDs); 2x HyDs for internal detection; FALCON (FLIM).

spin Olympus
Olympus IXplore SPIN (KCOP)

4 lasers (405, 488, 561, 640-nm), Yokogawa W1 spinning disc, 2x Hamamatsu Orca Fusion, Piezo z-stage, temp. and CO2 incubator, water dispenser, software CellSense + ScanR, 4x/0.16 dry, 10x/0.40 dry, 20x/0.80 dry, 20x/0.70 water, 30x/1.05 silicone, 40x/0.95 dry, 60x/1.50 oil, 60x/1.20 water, 100x/1.35 silicone

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Leica STED/SP8 (KCOP)

Inverted microscope with a white light laser. Located in the basement of building 439. White light laser + 405 nm DMOD, 2x HyD, 20x/0.75 IMM, 40x/1.10 W, 93x/1.30 Glyc motC, STED 3X 775-nm; FALCON (FLIM).

kdrl IBCS-BIP
Leica TCS SP5 (upright) & Leica TCS SP8 (inverted)

Wide-field fluorescent microscopes

Our workhorse for throughput
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Leica Thunder Imager 1°

Inverted DMi8 microscope with environment controls

thund IBCS-BIP
Leica Thunder Imager 2°

Upright DM6 microscope

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Leica DMi8

with colour camera

ix83 IBCS-BIP
Olympus IX83

PRIMO (micro-patterning) & luminescence imaging

Leica DM6 upright

Compound fluorescence microscopy with motorized XYZ stage

Olympus Screening Microscope

high throughput cell culture screen

Transmission Electron Microscope

tem IBCS-BIP
Zeiss LEO910

operation voltage at 80 kV