2024


Super‐Resolved Protein Imaging Using Bifunctional Light‐Up Aptamers
Grün, F.; van den Bergh, N.; Klevanski, M.; Verma, M. S.; Bühler, B.; Nienhaus, G. U.; Kuner, T.; Jäschke, A.; Sunbul, M.
2024. Angewandte Chemie International Edition, 63 (51), Art.-Nr.: 202412810. doi:10.1002/anie.202412810 Full textFull text of the publication as PDF document 
Gene expression patterns of the LDL receptor and its inhibitor Pcsk9 in the adult zebrafish brain suggest a possible role in neurogenesis
Gence, L.; Morello, E.; Rastegar, S.; Apalama, M. L.; Meilhac, O.; Bascands, J.-L.; Diotel, N.
2024. European Journal of Neuroscience. doi:10.1111/ejn.16586 Full textFull text of the publication as PDF document 
The Role of the Neural Cell Adhesion Molecule Ncam1b during Development and Regeneration of the Zebrafish Lateral Line System = Die Rolle des Neuronalen Zelladhäsionsmoleküls Ncam1b während der Entwicklung und Regeneration des Seitenliniensystems im Zebrafisch. PhD dissertation
Lange, A.
2024, October 21. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000174009 
Emc1 is essential for vision and zebrafish photoreceptor outer segment morphogenesis
McCann, T.; Sundaramurthi, H.; Walsh, C.; Virdi, S.; Alvarez, Y.; Sapetto-Rebow, B.; Collery, R. F.; Carter, S. P.; Moran, A.; Mulholland, R.; O’Connor, J. J.; Taylor, M. R.; Rauch, N.; Starostik, M. R.; English, M. A.; Swaroop, A.; Geisler, R.; Reynolds, A. L.; Kennedy, B. N.
2024. The FASEB Journal, 38 (19), Art.-Nr.: e70086. doi:10.1096/fj.202401977R Full textFull text of the publication as PDF document 
Comparative insight into the regenerative mechanisms of the adult brain in zebrafish and mouse: highlighting the importance of the immune system and inflammation in successful regeneration
Chen, J.; Sanchez-Iranzo, H.; Diotel, N.; Rastegar, S.
2024. The FEBS Journal, 291 (19), 4193–4205. doi:10.1111/febs.17231 Full textFull text of the publication as PDF document 
The dynamic function of nTRIP6 in the regulation of myogenesis. PhD dissertation
Gonda, Z.
2024, September 9. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000173046 Full textFull text of the publication as PDF document 
Investigation of the molecular mechanisms of the neuronal differentiation in p2 domain in the spinal cord. PhD dissertation
Cucun, G.
2024, August 28. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000173043 
Exploring zebrafish spinal cord development and tissue regeneration through transcriptomic data analysis. PhD dissertation
Chen, F.
2024, August 27. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000173042 
Nanoliter Droplet Microarrays Combined with Impedance Spectroscopy and Sandwiching Method for Advancements in Miniaturized Cell Culture and Screening. PhD dissertation
Zhou, M.
2024, August 19. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000172875 Full textFull text of the publication as PDF document 
The role of host response to chemotherapy: resistance, metastasis and clinical implications
Deo, A.; Sleeman, J. P.; Shaked, Y.
2024. Clinical and Experimental Metastasis, 41 (4), 495–507. doi:10.1007/s10585-023-10243-5 
Insights into the mechanisms of neuron generation and specification in the zebrafish ventral spinal cord
Cucun, G.; Köhler, M.; Pfitsch, S.; Rastegar, S.
2024. The FEBS Journal, 291 (4), 646–662. doi:10.1111/febs.16913 Full textFull text of the publication as PDF document 
Synthesis and Structure of Novel Phenothiazine Derivatives, and Compound Prioritization via In Silico Target Search and Screening for Cytotoxic and Cholinesterase Modulatory Activities in Liver Cancer Cells and In Vivo in Zebrafish
Kisla, M. M.; Yaman, M.; Zengin-Karadayi, F.; Korkmaz, B.; Bayazeid, O.; Kumar, A.; Peravali, R.; Gunes, D.; Tiryaki, R. S.; Gelinci, E.; Cakan-Akdogan, G.; Ates-Alagoz, Z.; Konu, O.
2024. ACS Omega, 9 (28), Art.-Nr.:30594–30614. doi:10.1021/acsomega.3c06532 Full textFull text of the publication as PDF document 
Sporadic feeding regulates robust food entrainable circadian clocks in blind cavefish
Di Rosa, V.; Frigato, E.; Negrini, P.; Cristiano, W.; López-Olmeda, J. F.; Rétaux, S.; Sánchez-Vázquez, F. J.; Foulkes, N. S.; Bertolucci, C.
2024. iScience, 27 (7), 110171. doi:10.1016/j.isci.2024.110171 Full textFull text of the publication as PDF document 
Beam shaping in light-sheet microscopy: an experimental analysis
Hüpfel, M.; Nienhaus, G. U.
2024. Journal of Physics: Photonics, 6 (3), Art.-Nr.: 035003. doi:10.1088/2515-7647/ad46a9 Full textFull text of the publication as PDF document 
TRIM25 controls the Androgen Receptor and PSA/KLK3 levels in Prostate Cancer. PhD dissertation
Pauletto, E.
2024, June 28. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000172055 Full textFull text of the publication as PDF document 
Thio-2 Inhibits Key Signaling Pathways Required for the Development and Progression of Castration-resistant Prostate Cancer
Neeb, A.; Figueiredo, I.; Bogdan, D.; Cato, L.; Stober, J.; Jiménez-Vacas, J. M.; Gourain, V.; Lee, I. I.; Seeger, R.; Muhle-Goll, C.; Gurel, B.; Welti, J.; Nava Rodrigues, D.; Rekowski, J.; Qiu, X.; Jiang, Y.; Di Micco, P.; Mateos, B.; Bielskutė, S.; Riisnaes, R.; Ferreira, A.; Miranda, S.; Crespo, M.; Buroni, L.; Ning, J.; Carreira, S.; Bräse, S.; Jung, N.; Gräßle, S.; Swain, A.; Salvatella, X.; Plymate, S. R.; Al-Lazikani, B.; Long, H. W.; Yuan, W.; Brown, M.; Cato, A. C. B.; de Bono, J. S.; Sharp, A.
2024. Molecular Cancer Therapeutics, 23 (6), 791–808. doi:10.1158/1535-7163.MCT-23-0354 Full textFull text of the publication as PDF document 
Forty years on: a brief history of clinical and experimental metastasis
Sleeman, J. P.; Haier, J.
2024. Clinical & Experimental Metastasis, 41 (3), 159–161. doi:10.1007/s10585-024-10281-7 Full textFull text of the publication as PDF document 
Mechanistic insights into the adverse effects of cisplatin employing the zebrafish model. PhD dissertation
Zhang, D.
2024, May 7. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000169668 
Reversible Influence of Hemipiperazine Photochromism on the Early Development of Zebrafish Embryo
Seliwjorstow, A.; Takamiya, M.; Rastegar, S.; Pianowski, Z.
2024. ChemBioChem, 25 (8), Article e202400143. doi:10.1002/cbic.202400143 Full textFull text of the publication as PDF document 
The regulation of RHEB subcellular localisation in early zebrafish myofibres. PhD dissertation
Fettig, R.
2024, April 3. Karlsruher Institut für Technologie (KIT). doi:10.5445/IR/1000168930 
Discovery of Hidden Dynamic Processes through AI-based Automated Active Learning: A Use Case in Light Microscopy
Friederich, N.; Yamachui Sitcheu, A. J.; Neumann, O.; Mikut, R.; Hilbert, L.
2024, March 12. AI and biology (2024), Heidelberg, Germany, March 12–15, 2024 
Systematic acquisition of toxicity data in non-sentient models across animal phylogeny: implications for read-across and estimation of toxicity in humans
Hayot, G.; Massei, R.; Lloyd, G.; Keith, N.; Diwan, G.; Martínez López, R.; Barnard, M.; Cramer von Clausbruch, C. A.; Grasse, N.; Smoot, S.; Escher, B.; Tennessen, J.; Tindall, A.; Oliver, B.; Shaw, J.; Scholz, S.; Freedman, J.; Strähle, U.; Colbourne, J. K.; Weiss, C.; Dickmeis, T.
2024. Naunyn-Schmiedeberg’s archives of pharmacology, 397 (Suppl. 1), S17–69. doi:10.1007/s00210-024-02974-3 
Surface-Patterned DNA Origami Rulers Reveal Nanoscale Distance Dependency of the Epidermal Growth Factor Receptor Activation
Mayer, I.; Karimian, T.; Gordiyenko, K.; Angelin, A.; Kumar, R.; Hirtz, M.; Mikut, R.; Reischl, M.; Stegmaier, J.; Zhou, L.; Ma, R.; Nienhaus, G. U.; Rabe, K. S.; Lanzerstorfer, P.; Domínguez, C. M.; Niemeyer, C. M.
2024. Nano Letters, 24 (5), 1611–1619. doi:10.1021/acs.nanolett.3c04272 Full textFull text of the publication as PDF document 
Der Zellkern als Vorbild für zukünftige DNA-Computerchips?
Hilbert, L.
2024. BIOspektrum, 30 (1), 19–22. doi:10.1007/s12268-024-2090-4 Full textFull text of the publication as PDF document 
Caveolae disassemble upon membrane lesioning and foster cell survival
Štefl, M.; Takamiya, M.; Middel, V.; Tekpınar, M.; Nienhaus, K.; Beil, T.; Rastegar, S.; Strähle, U.; Nienhaus, G. U.
2024. iScience, 27 (2), 108849. doi:10.1016/j.isci.2024.108849 Full textFull text of the publication as PDF document 
Photon-Efficient Aberration Correction for 3D-STED Imaging of Thick Biological Specimens Using Sensorless Adaptive Optics
Dai, S.; Kobitski, A.; Barati Sedeh, A.; Eroğlu-Kayıkçı, S.; Hilbert, L.; Nienhaus, G. U.
2024. ACS Photonics, 11 (1), 310–320. doi:10.1021/acsphotonics.3c01558 
520 nm and 660 nm light‐emitting diodes modulates pancreatic development and beta cell functions in zebrafish embryos
Üstündağ, Ü. V.; Ünal, İ.; Cansız, D.; Beler, M.; Kanagaraj, N. K.; Kumar, A. R.; Peravali, R.; Emekli-Alturfan, E.
2024. Photochemistry and Photobiology. doi:10.1111/php.14050 
Measurement and classification of bold-shy behaviours in medaka fish
Pierotti, S.; Brettell, I.; Fitzgerald, T.; Herder, C.; Aadepu, N.; Pylatiuk, C.; Wittbrodt, J.; Birney, E.; Loosli, F.
2024. Cold Spring Harbor Laboratory. doi:10.1101/2024.10.18.618696 Full textFull text of the publication as PDF document 
Development of a Benzophenone-Free Red Propolis Extract and Evaluation of Its Efficacy against Colon Carcinogenesis
Squarisi, I. S.; Ribeiro, V. P.; Ribeiro, A. B.; Souza, L. T. M. de; Junqueira, M. de M.; Oliveira, K. M. de; Hayot, G.; Dickmeis, T.; Bastos, J. K.; Veneziani, R. C. S.; Ambrósio, S. R.; Tavares, D. C.
2024. Pharmaceuticals, 17 (10), Art.-Nr.: 1340. doi:10.3390/ph17101340 Full textFull text of the publication as PDF document 
Mapping the cellular expression patterns of vascular endothelial growth factor aa and bb genes and their receptors in the adult zebrafish brain during constitutive and regenerative neurogenesis
Fernezelian, D.; Pfitsch, S.; Rastegar, S.; Diotel, N.
2024. Neural Development, 19, Article no: 17. doi:10.1186/s13064-024-00195-1 Full textFull text of the publication as PDF document 
Modular control of vertebrate axis segmentation in time and space
Seleit, A.; Brettell, I.; Fitzgerald, T.; Vibe, C.; Loosli, F.; Wittbrodt, J.; Naruse, K.; Birney, E.; Aulehla, A.
2024. The EMBO Journal, 43 (18), 4068–4091. doi:10.1038/s44318-024-00186-2 Full textFull text of the publication as PDF document 
A comparative metabolomic investigation of different sections of Sicilian Citrus x limon (L.) Osbeck, characterization of bioactive metabolites, and evaluation of in vivo toxicity on zebrafish embryo
Pagliari, S.; Sicari, M.; Pansera, L.; Guidi Nissim, W.; Mhalhel, K.; Rastegar, S.; Germanà, A.; Cicero, N.; Labra, M.; Cannavacciuolo, C.; Montalbano, G.; Campone, L.
2024. Journal of Food Science, 89 (6), 3729–3744. doi:10.1111/1750-3841.17079 
Reactive Oxygen Species Signaling and Oxidative Stress: Transcriptional Regulation and Evolution
Hong, Y.; Boiti, A.; Vallone, D.; Foulkes, N. S.
2024. Antioxidants, 13 (3), Art.-Nr.: 312. doi:10.3390/antiox13030312 Full textFull text of the publication as PDF document 
Opto-fluidically multiplexed assembly and micro-robotics
Erben, E.; Liao, W.; Minopoli, A.; Maghelli, N.; Lauga, E.; Kreysing, M.
2024. Light: Science & Applications, 13 (1), 59. doi:10.1038/s41377-024-01406-4 Full textFull text of the publication as PDF document 
Evaluating Toxicity of Chemicals using a Zebrafish Vibration Startle Response Screening System
Hayot, G.; Marcato, D.; Cramer von Clausbruch, C. A.; Pace, G.; Strähle, U.; Colbourne, J. K.; Pylatiuk, C.; Peravali, R.; Weiss, C.; Scholz, S.; Dickmeis, T.
2024. Journal of visualized experiments : JoVE, 203, Art.-Nr.: e66153. doi:10.3791/66153 
Role of melanocortin system in the locomotor activity rhythms and melatonin secretion as revealed by agouti‐signalling protein ( asip1 ) overexpression in zebrafish
Godino-Gimeno, A.; Leal, E.; Chivite, M.; Tormos, E.; Rotllant, J.; Vallone, D.; Foulkes, N. S.; Míguez, J. M.; Cerdá-Reverter, J. M.
2024. Journal of Pineal Research, 76 (1), Art.-Nr.: e12939. doi:10.1111/jpi.12939 Full textFull text of the publication as PDF document 
Comparison of Decellularized Human Dermal Scaffolds versus Bovine Collagen/Elastin Matrices for Engineering of Soft-Tissue Flaps
Falkner, F.; Mayer, S. A.; Heuer, M.; Brune, J.; Helt, H.; Bigdeli, A. K.; Dimmler, A.; Heimel, P.; Thiele, W.; Sleeman, J. P.; Bergmeister, H.; Schneider, K. H.; Kneser, U.; Thomas, B.
2024. Plastic and Reconstructive Surgery, 153 (1), 130 – 141. doi:10.1097/PRS.0000000000010511 
Probe-free optical chromatin deformation and measurement of differential mechanical properties in the nucleus
Seelbinder, B.; Wagner, S.; Jain, M.; Erben, E.; Klykov, S.; Stoev, I. D.; Krishnaswamy, V. R.; Kreysing, M.
2024. eLife, 13. doi:10.7554/eLife.76421 Full textFull text of the publication as PDF document